Pairwise Alignments

Query, 249 a.a., RNA methyltransferase, TrmH family, group 3 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 275 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Rhodopseudomonas palustris CGA009

 Score = 88.6 bits (218), Expect = 1e-22
 Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 69  HQGVVARLFEAGYVELDDLLQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLI- 127
           HQG++A         +D L Q        +++ LDQ+ DP N G + RS  A     ++ 
Sbjct: 100 HQGMLAEADPLQGPRIDTLPQHG------IVLVLDQITDPHNVGAILRSAAAFAVQAIVT 153

Query: 128 VPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSVNAFT 187
             RH+    G  A ++A+GALE +P+  V NLARAL E  + G+   G +  EG  +   
Sbjct: 154 TARHSPEATGVLA-KSASGALELVPLVLVQNLARALTELNDRGFLTVG-LDSEGDDDLAA 211

Query: 188 ATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 238
             LR P  LVLG E KG+R    + C+T+  + M  +  S NV+ A AL L
Sbjct: 212 VELRQPLALVLGAEGKGLRQLTRQTCNTVARLDMPGEIKSLNVSNAAALAL 262