Pairwise Alignments

Query, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 831 a.a., DNA topoisomerase I (EC 5.99.1.2) from Xanthomonas campestris pv. campestris strain 8004

 Score =  482 bits (1241), Expect = e-140
 Identities = 278/625 (44%), Positives = 377/625 (60%), Gaps = 35/625 (5%)

Query: 1   MGKDLIIVESPAKVKTIKKFLGGKYVVQASVGHVRDLPTNEIGVDEANNFAPQYRVIDGK 60
           M K L+IVESPAK KTI K+LG  + V AS GHVRDL   E  VD  N FA +Y +I+  
Sbjct: 1   MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKN 60

Query: 61  QKVVDTLREAAAKADTVYLAPDPDREGEAIAWHVAALIEG----KADNIKRIQFNEITAR 116
           +K V+ +  AA  AD +YLA DPDREGEAI+WH+A +++     K   ++R+ F EIT R
Sbjct: 61  EKHVEAIARAAKSADDIYLATDPDREGEAISWHIAEILKERGLLKDKTMQRVVFTEITPR 120

Query: 117 AVREALENPRDLNRALFDAQQARRVLDRLVGYKLSPLLWKKVKRGISAGRVQSVALRLIV 176
           A++EA+  PR +   L DAQQARR LD LVG+ LSP+LW+KV+RG+SAGRVQS ALR+IV
Sbjct: 121 AIKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV 180

Query: 177 DRESERRAFTPEEYWLFRAMFAKNVPGATPTSPDPQYAPFKAELAKIDGKKAH---VADA 233
           +RE E  AF   EYW   A          P+ P      F A L K+DG+K     V D 
Sbjct: 181 EREEEIEAFIAREYWSIDAHCRH------PSQP------FNARLIKLDGQKFEQFTVTDG 228

Query: 234 DAANA----LEDAMRGKPFVITAVERKKRERQPQPPFITSTLQQAANQRLGYSAKRTMNI 289
           D A A    ++ A +G   V T V  K+R+R+P PPF TSTLQQ A+++LG++ ++TM +
Sbjct: 229 DTAEAARLRIQQAAQGVLHV-TDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQV 287

Query: 290 AQRLYEGVELGEMGTVALITYMRTDSVRVSDEARDAARAFVTETWGADFCPAKPRQFKTK 349
           AQ+LYEGV LG+ G+V LI+YMRTDSV +S +A    R  +   +G    P +P  + TK
Sbjct: 288 AQKLYEGVALGDEGSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQPNAYTTK 347

Query: 350 G-SAQDAHEAVRPVDVNVTPDSVKHLLPPDQFQLYRLVWSRFVASQMAPARFDDTTVAIA 408
             +AQ+AHEAVRP     TP  V   L  D+ +LY L+W R VA QM PA  +  +V ++
Sbjct: 348 SKNAQEAHEAVRPTSALRTPAQVARFLSDDERRLYELIWRRAVACQMIPATLNTVSVDLS 407

Query: 409 CGPAE-WRAKGERMLFPGFLAAMPQ--------KEEGDAELPPLQEGETLHPVSVEKEQK 459
            G    +RA G  ++  GFLA   +         E+   +LP ++ G+ +    +  +Q 
Sbjct: 408 AGSEHVFRASGTTVVVAGFLAVYEEGKDTKSSEDEDEGRKLPLMKAGDNIPLDRIVTDQH 467

Query: 460 FTQPPARYTEASLVRELEERGIGRPSTYASIISTLIDRDYTRLEDKHFVPTDLGATVCDL 519
           FTQPP R+TEA+LV+ LEE GIGRPSTYASII TL  R Y  +E + F PTD+G  V   
Sbjct: 468 FTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSKF 527

Query: 520 LARHFTTLMDVGFTAQMEDSLDKVAEGGLDWVELLSRFSADFNPTLESAAKAME-TVKGG 578
           L+ HFT  +D  FTA +ED LD V+ G  +W+ L+ +F   F   +E    +++ T  G 
Sbjct: 528 LSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEKFWGPFKELVEDKKDSLDKTDAGS 587

Query: 579 LPTDVTCPECGKPVVVKFGKAGPFL 603
           +      P  GK V  + G+ GP +
Sbjct: 588 VRVLGADPVSGKEVSARIGRFGPMV 612