Pairwise Alignments

Query, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 670 a.a., DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster from Xanthomonas campestris pv. campestris strain 8004

 Score =  172 bits (435), Expect = 7e-47
 Identities = 175/673 (26%), Positives = 278/673 (41%), Gaps = 91/673 (13%)

Query: 5   LIIVESPAKVKTIKKFLGGKY-----------VVQASVGHVRDLPTNEIGVDEANNFA-- 51
           L + E P++ K I + LG               V   +GH+ +    E   ++   ++  
Sbjct: 3   LFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRWSIE 62

Query: 52  -----PQYRVIDGKQKVVD---TLREAAAKADTVYLAPDPDREGEAIAWHVAALIEGKAD 103
                PQ   ++ K K       ++   AKA  + +A D DREGE IA  +  L  G   
Sbjct: 63  QLPIIPQRWQVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIDLC-GYRG 121

Query: 104 NIKRIQFNEITARAVREALENPRDLNRAL--FDAQQARRVLDRLVGYKLSPLLWKKVKRG 161
            I+R+  + +   ++R AL   R     L  + +  AR   D LVG  LS L     ++ 
Sbjct: 122 PIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLGRQA 181

Query: 162 -----ISAGRVQSVALRLIVDRESERRAFTPEEYWLFRAMFAKNVPGATPTSPDPQYAPF 216
                +S GRVQ+  L+L+VDR+ E  AF    YW        +    T     P     
Sbjct: 182 GYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVYLTTSGQAFTAQWVSPDTCT- 240

Query: 217 KAELAKIDGKKAHVADADAANALEDAMRGKPFVITAVERKKRERQPQPPFITSTLQQAAN 276
                  D     +    A  A +         + +VE ++    P  PF   TLQ+  +
Sbjct: 241 -------DDSGRCLQQPVAQQAAQQIRATGSAQVVSVETERVREGPPLPFDLGTLQELCS 293

Query: 277 QRLGYSAKRTMNIAQRLYEGVELGEMGTVALITYMRTDSVRVSDEARDAARAFVTETWGA 336
           ++LG   + T++IAQ LYE        T    TY R+DS  + +         +      
Sbjct: 294 KQLGLDVQETLDIAQALYE--------THKATTYPRSDSGYLPESMFAEVPIVLDSLPKT 345

Query: 337 DFC--PAKPRQFKTKGSAQ------DAHEAVRPV--DVNVTPDSVKHLLPPDQFQLYRLV 386
           DF   P   +  +T+ S         AH  + P     N++  S K L       +Y+L+
Sbjct: 346 DFSLRPIIDQLDRTQRSRAWNDAKVSAHHGIIPTLEPANLSAMSEKELA------VYKLI 399

Query: 387 WSRFVASQMAPARFDDTTVAIACGPAEWRAKGERMLFPGF--LAAMPQKEEGDAE----- 439
            + ++A  +    FD T   ++CG     A G++++  G+  + A PQ EE         
Sbjct: 400 RAHYLAQFLPHHEFDRTVANLSCGQQTLTATGKQVVVKGWRLVLAEPQPEEDSDTAARSQ 459

Query: 440 -LPPLQEGETLHPVSVEKEQKFTQPPARYTEASLVREL-----------------EERGI 481
            LP L+EG +     V+ +   TQP   YT+  LV+ +                 +  GI
Sbjct: 460 VLPALREGVSCQVADVDLKALKTQPSRPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGI 519

Query: 482 GRPSTYASIISTLIDRDYTRLEDKHFVPTDLGATVCDLLARHFTTLMDVGFTAQMEDSLD 541
           G  +T A+IIS LI R Y   + +    +D   T+ D +      + D G TA  E +LD
Sbjct: 520 GTEATRANIISGLIARGYLMKKGRAIRASDAAFTLIDAVP---AAIADPGTTAVWEQALD 576

Query: 542 KVAEGGLDWVELLSRFSADFNPTLESAAKAMETVKGGLPTDVTCPECGKPVVVKFGKAGP 601
            +  G L     + + +A  +  +   A A  ++K  +P    CP+CG P   + GK+GP
Sbjct: 577 MIEAGQLTLDVFIGKQAAWISQLITQYASASLSIK--VPHGPACPQCGAPTRQRSGKSGP 634

Query: 602 FLACTAYPDCKFT 614
           F +C+ YPDCK T
Sbjct: 635 FWSCSRYPDCKGT 647



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 641 CPECGKDLVVKKARTGSRFIACTGYPDCRHTEPFSTG 677
           CP+CG     +  ++G  F +C+ YPDC+ T P  +G
Sbjct: 618 CPQCGAPTRQRSGKSGP-FWSCSRYPDCKGTLPVESG 653



 Score = 29.3 bits (64), Expect = 7e-04
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 677 GIACPREGCDGQLVEKSSKRGKIFYSCNRFPKC 709
           G ACP+  C     ++S K G  F+SC+R+P C
Sbjct: 615 GPACPQ--CGAPTRQRSGKSGP-FWSCSRYPDC 644