Pairwise Alignments
Query, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710
Subject, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2
Score = 213 bits (542), Expect = 3e-59
Identities = 201/813 (24%), Positives = 332/813 (40%), Gaps = 170/813 (20%)
Query: 22 GGKYVVQASVGHVR-----------DLPTNEIGVDEANNFAPQYRVIDGK--QKVVDTLR 68
G VV ++VGH+ D P +I N+ P + + K QK +D L+
Sbjct: 40 GESIVVASAVGHLYTLQEKTKTKFGDYPVYDI------NWVPASTLDEKKYIQKYIDALK 93
Query: 69 EAAAKADTVYLAPDPDREGEAIAWHVAALIEGKADNIKRIQFNEITARAVREALENPRDL 128
+ + A+ Y+A D D EGE I +H G+ N R++F+ +T + + +A ENP ++
Sbjct: 94 KVSKDANKFYVATDWDIEGELIGYHALNFSCGQK-NAHRLRFSSLTKKEILKAYENPNEI 152
Query: 129 NRALFDAQQARRVLDRLVGYKLSPLLWKKVK-----RGISAGRVQSVALRLIVDRESERR 183
+ L DA +R +D G +S L + V + +S GRVQ AL +VD+E E R
Sbjct: 153 DFGLVDAGDSRHKIDWYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIR 212
Query: 184 AFTPEEYWLFRAMFAKNVPGATPTSPDPQYAPFKAELAKIDGKKAHVADADAANALEDAM 243
F P YW+ A+ ++ EL K D + AN + +
Sbjct: 213 NFVPTPYWVLEALLDNDLIAVH-------------ELEKF-------WDEEQANKAYEKV 252
Query: 244 RG-KPFVITAVERKKRERQPQPPFITSTLQQAANQRLGYSAKRTMNIAQRLYEGVELGEM 302
+G K ++ V++ + P PPF LQ+ A+ +S K+T +AQ+LYE
Sbjct: 253 KGQKQATVSDVKKSMKTIPPNPPFDLGALQREAHNMFRFSPKKTQEVAQKLYEK------ 306
Query: 303 GTVALITYMRTDSVRVSDEARDAARAFVTETWGADFCP-----AKPRQFKTKGSAQD-AH 356
+Y RT S ++ D+ + ++ P + G D AH
Sbjct: 307 ---GYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKNYKPYIETILNENRKPISGKNDDPAH 363
Query: 357 EAVRPVDVNVTPDSVKHLLPPDQFQLYRLVWSRFVASQMAPARFDDTTVAIACGPAEWRA 416
AV VDV K LP D+ +LY L+ R +A A+ + + + + ++
Sbjct: 364 PAVHAVDVP------KEKLPDDELKLYELIARRTIALYWDNAKREYSKINLDINGETFKL 417
Query: 417 KGERMLFPGFLAAMPQKEEGDAELPPLQEGETLHPVSVEKEQKFTQPPARYTEASLVREL 476
G R + G+ + + ELP L++ + ++ ++ E K T+PP RYT AS+++EL
Sbjct: 418 SGSRTVEEGWHEIYYYTKFDEVELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKEL 477
Query: 477 EERGIGRPSTYASIISTLIDRDYTRLEDKHFVPTDLGATVCDLLARHFTTLMDVGFTAQM 536
E+R +G +T A I+ L R Y +ED TDLG V + L ++ +++ T +
Sbjct: 478 EKRKLGTKATRADILEKLTKRGYV-IEDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDL 536
Query: 537 EDSLDKVAEGGLDWVELLSRFSADFNPTLESAAKAMETVKGGLPTDVTCPECGKPVVVKF 596
ED L+ + + + E++ T + K + + + E G +V K
Sbjct: 537 EDKLELIQDKKIKKEEVIQE-------TKDKLTKILGEFR------LKEKEIGTELVDKL 583
Query: 597 GKAGPFLACTAYPDCKFTSNFSRDEKGDIVIEQRAREELEAVGTCPECGKDLVVKKARTG 656
L+ +G C +CG D+++ + +
Sbjct: 584 DSTN--------------------------------RSLQIIGKC-KCGGDMIIIRTKGK 610
Query: 657 SRFIACTGYPDCRHTEPFST-------------------GI----ACPREGC-------D 686
RF+ C+ YPDC T P G+ C C D
Sbjct: 611 KRFVGCSNYPDCEVTFPLPQKGRIKVLNEVCEKCQNPVIGLDRIKICVNPDCSTRISEED 670
Query: 687 GQLVEKSSKRGKI-----------------FYSCNRFPKCDYA------LWDWPVPGPCP 723
+ +EK+ K KI F C +PKC Y + + G CP
Sbjct: 671 KKEIEKAEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKLNGESNEKEIVGKCP 730
Query: 724 VCGSPLLVKKSTRAKGLHIACPE-KTCRYTQEL 755
CGS L +K G I C CR+T+++
Sbjct: 731 KCGSDLYKRKG--RFGEFIGCSNYPKCRHTEKI 761
Score = 79.7 bits (195), Expect = 6e-19
Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 585 CPECGKPVVVKFGKAGPFLACTAYPDCKFTSNFSRDEKGDIVIEQRAREELEAVGTCPEC 644
CP+CG +++K G G F C YP CK+T + + E E VG CP+C
Sbjct: 684 CPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKLNGESN-----------EKEIVGKCPKC 732
Query: 645 GKDLVVKKARTGSRFIACTGYPDCRHTEPFSTGIACPREGCDGQLVEKSSKRGK 698
G DL +K R G FI C+ YP CRHTE I +E G+ ++ K K
Sbjct: 733 GSDLYKRKGRFGE-FIGCSNYPKCRHTEK----IDKKKEDTPGETKAETKKEAK 781
Score = 42.0 bits (97), Expect = 1e-07
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 585 CPECGKPVVVKFGKAGPFLACTAYPDCKFTSNFSRDEKGDIVIEQRAREELEAVGTCPEC 644
CP+CG + + G+ G F+ C+ YP C+ T + +K D E +A + EA P+
Sbjct: 729 CPKCGSDLYKRKGRFGEFIGCSNYPKCRHTEKIDK-KKEDTPGETKAETKKEAK---PKT 784
Query: 645 GKDLVVKKART 655
K KK T
Sbjct: 785 TKKAAPKKTAT 795