Pairwise Alignments

Query, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 849 a.a., DNA topoisomerase I, bacterial from Sphingomonas koreensis DSMZ 15582

 Score =  450 bits (1157), Expect = e-130
 Identities = 285/686 (41%), Positives = 374/686 (54%), Gaps = 68/686 (9%)

Query: 5   LIIVESPAKVKTIKKFLGGKYVVQASVGHVRDLPTNEIGVDEANNFAPQYRVIDGKQKVV 64
           L+IVESPAK KTI+K+LG  Y V AS GHVRDLP  +  V     FA  +     K K +
Sbjct: 3   LVIVESPAKAKTIEKYLGKDYRVLASYGHVRDLPPKDGSVKPDEGFAMDWETYADKAKQL 62

Query: 65  DTLREAAAKADTVYLAPDPDREGEAIAWHVAALIEGKA---DNIKRIQFNEITARAVREA 121
             + + A KAD + LA DPDREGEAI+WHV  L+  K      ++R+ FN IT  A+  A
Sbjct: 63  KAITDEAKKADRLILATDPDREGEAISWHVQELLAKKKALPKEVERVTFNAITKPAILAA 122

Query: 122 LENPRDLNRALFDAQQARRVLDRLVGYKLSPLLWKKVKRGISAGRVQSVALRLIVDRESE 181
           +  PR L+  L DA +ARR LD LVG+ LSP+LW+K+    SAGRVQSVALRLIV+RE E
Sbjct: 123 MAAPRQLDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVERERE 182

Query: 182 RRAFTPEEYWLFRAMFAKNVPGATPTSPDPQYAPFKAELAKIDGKKAH---VADADAANA 238
              F  +EYW   A              +     F A L + +GKK     + D   AN 
Sbjct: 183 IELFKAQEYWSVTAHL------------EHDGTAFDARLVRFEGKKLDRLSIGDEGTANR 230

Query: 239 LEDAMRGKPFVITAVERKKRERQPQPPFITSTLQQAANQRLGYSAKRTMNIAQRLYEGVE 298
            + A+    F + +VE K   R P PPF TSTLQQ A ++LG+SA  TM IAQ LYE   
Sbjct: 231 AKAAVEQGRFTVASVETKPAMRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQGLYED-- 288

Query: 299 LGEMGTVALITYMRTDSVRVSDEARDAARAFVTETWGADFCPAKPRQFKTKG-SAQDAHE 357
                    ITYMRTD V++   A DAAR  +   + A + P KPRQ++TK  +AQ+AHE
Sbjct: 289 -------GAITYMRTDGVQMDGSAIDAARKAIVGRYQASYIPDKPRQYQTKAKNAQEAHE 341

Query: 358 AVRPVDVNVTPDSVKHLLPPDQFQLYRLVWSRFVASQMAPARFDDTTVAIA--CGPAEWR 415
           A+RP D +            D  +LY L+W R +ASQMA AR + TTV +    G    R
Sbjct: 342 AIRPTDFSRDKAG-----SGDHAKLYDLIWKRALASQMASARLERTTVELEEPTGQDALR 396

Query: 416 AKGERMLFPGFLAAMPQ--KEEGDAE---LPPLQEGETLHPVSVEKEQKFTQPPARYTEA 470
           A G+ +LFPG+LA   +   +EGD +   LP ++ G+T     V+ EQ FTQPP+R++EA
Sbjct: 397 ATGQVVLFPGYLALYEEGRDDEGDEDSRRLPVIRNGDTPAKKGVDAEQHFTQPPSRFSEA 456

Query: 471 SLVRELEERGIGRPSTYASIISTLIDRDYTRLEDKHFVPTDLGATVCDLLARHFTTLMDV 530
           SLV+ +EE GIGRPSTYASII  L DR Y R+E   F   + G  +   L R F   ++ 
Sbjct: 457 SLVKRMEELGIGRPSTYASIIQVLKDRAYVRVEKNRFFAEETGRLLTAFLERFFEKYVNY 516

Query: 531 GFTAQMEDSLDKVAEGGLDWVELLSRFSADFNP------------TLESAAKAMETV--- 575
            FTA +E+ LD V+ G   W  +L  F  DF P              E+  K +E     
Sbjct: 517 DFTAGLEEELDDVSGGRAGWQAVLEAFWKDFRPRTDEVMERKPSEVTEALDKFLEPYLFP 576

Query: 576 -KGGLPTDVTCPECGK-PVVVKFGKAGPFLACTAYPDCKFTSNFSRD---EKGDIVIEQR 630
            KG       CP CG+  + ++ GK G F+AC+ YP+CKFT  F +    E GD      
Sbjct: 577 DKGDGSDPRLCPACGEGRLALRGGKFGAFVACSNYPECKFTRRFGQPGGAEGGD------ 630

Query: 631 AREELEAVGTCPECGKDLVVKKARTG 656
                E +G  P  G+D+  +  R G
Sbjct: 631 --TGPEVIGQDPVTGEDISRRSGRFG 654



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 33/137 (24%)

Query: 552 ELLSRFSADFNPTLESAAKAMETVKGGLPTDVT-------------------CPECGKPV 592
           E +SR S  F P ++   +  E  +  +P D+                     PE GKP+
Sbjct: 644 EDISRRSGRFGPYIQRG-EGKEAARASIPKDIPEFDLDWAVRLLSLPRTIGDHPESGKPI 702

Query: 593 VVKFGKAGPFLACTA-YPDCKFTSNFSRDEKGDIVIE------------QRAREELEAVG 639
               G+ GP+LA    Y     T +         V++              +RE L+  G
Sbjct: 703 TASIGRYGPYLAHDGKYARLSSTMDVFETGMNAAVVKLAEAAAGGGRARGASREPLKVFG 762

Query: 640 TCPECGKDLVVKKARTG 656
             PE G ++ + + R G
Sbjct: 763 AHPESGAEIKLMEGRFG 779