Pairwise Alignments

Query, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 833 a.a., DNA topoisomerase I from Dyella japonica UNC79MFTsu3.2

 Score =  487 bits (1253), Expect = e-141
 Identities = 282/628 (44%), Positives = 381/628 (60%), Gaps = 39/628 (6%)

Query: 1   MGKDLIIVESPAKVKTIKKFLGGKYVVQASVGHVRDLPTNEIGVDEANNFAPQYRVIDGK 60
           M K+L+IVESPAK KTI K+LG  + V AS GHVRDL   E  VD  + FA  Y +I+  
Sbjct: 1   MAKNLLIVESPAKAKTINKYLGKDFQVLASYGHVRDLKPKEGAVDPDHGFAMAYEIIERN 60

Query: 61  QKVVDTLREAAAKADTVYLAPDPDREGEAIAWHVAALIEG----KADNIKRIQFNEITAR 116
           QK VD +  AA  AD +YLA D DREGEAI+WH++ +++     K   + R+ F+EIT +
Sbjct: 61  QKHVDAIARAAQVADDIYLATDLDREGEAISWHISEILQQRGLTKGKQLHRVVFSEITPK 120

Query: 117 AVREALENPRDLNRALFDAQQARRVLDRLVGYKLSPLLWKKVKRGISAGRVQSVALRLIV 176
           A++ A+  PR L+  L DAQQARR LD LVG+ LSP+LW+KV+RG+SAGRVQS ALR+IV
Sbjct: 121 AIKAAVAQPRQLSHDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV 180

Query: 177 DRESERRAFTPEEYWLFRAMFAKNVPGATPTSPDPQYAPFKAELAKIDGKK------AHV 230
           +RE E  AF   EYW   A               P+   F A L ++ GKK       + 
Sbjct: 181 EREEEIEAFVAREYWSVEAALRH-----------PE-GDFSARLTRLYGKKFEQFDLTNE 228

Query: 231 ADADAANA-LEDAMRGKPFVITAVERKKRERQPQPPFITSTLQQAANQRLGYSAKRTMNI 289
           ADA AA A L++A  G+   ++ V  K+R+R+P PPF TSTLQQ A ++LG+S  RTM +
Sbjct: 229 ADAMAARAALKEAAHGR-LTVSDVGSKERKRRPAPPFTTSTLQQEAARKLGFSTSRTMKV 287

Query: 290 AQRLYEGVELGEMGTVALITYMRTDSVRVSDEARDAARAFVTETWGADFCPAKPRQFKTK 349
           AQ LYEGV LG  G V LITYMRTDSV +S++A    R  +   +G    P  P+ +K+K
Sbjct: 288 AQGLYEGVSLGSEGNVGLITYMRTDSVALSEDAVGELRQLIARDYGNKALPDHPQVYKSK 347

Query: 350 G-SAQDAHEAVRPVDVNVTPDSVKHLLPPDQFQLYRLVWSRFVASQMAPARFDDTTVAIA 408
             +AQ+AHEA+RP     TP  V   L  +Q +LY L+W R VA QM  A  +  +V  A
Sbjct: 348 SKNAQEAHEAIRPTSAMYTPREVASFLNDEQRKLYELIWKRTVACQMIHATLNTVSVDFA 407

Query: 409 C-----GPAEWRAKGERMLFPGFLAAMPQ-KEEGDAE-------LPPLQEGETLHPVSVE 455
                 G A +R+ G  ++ PGFLA   + +++  AE       LP L++GE +    + 
Sbjct: 408 LPHAQGGEAGFRSTGTTVVDPGFLAVYEEGRDQKSAEDDDEGRRLPRLEKGEQVALHDIL 467

Query: 456 KEQKFTQPPARYTEASLVRELEERGIGRPSTYASIISTLIDRDYTRLEDKHFVPTDLGAT 515
            +Q FT+PP RY+EASLV+ LEE GIGRPSTYASII  L++R+Y  L+ + F PTD+G  
Sbjct: 468 ADQHFTEPPPRYSEASLVKSLEEHGIGRPSTYASIIQVLLNREYVLLDSRRFKPTDVGRA 527

Query: 516 VCDLLARHFTTLMDVGFTAQMEDSLDKVAEGGLDWVELLSRFSADFNPTLESAAKAMETV 575
           V   L +HFT  +D  FTA++ED LD V+ G   WV L+ RF   F   +E   + ++  
Sbjct: 528 VSKFLTQHFTRYVDYDFTAKLEDELDAVSRGEEAWVPLMERFWQPFKQQVEEKTETVDRS 587

Query: 576 KG-GLPTDVTCPECGKPVVVKFGKAGPF 602
           +  G       P+ GKPV V+ G+ GP+
Sbjct: 588 EATGARELGNDPKSGKPVSVRLGRYGPY 615