Pairwise Alignments

Query, 459 a.a., transcriptional regulatory protein zraR (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  722 bits (1863), Expect = 0.0
 Identities = 377/480 (78%), Positives = 411/480 (85%), Gaps = 24/480 (5%)

Query: 1   MSDVTVLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKVREKARDAVLMDVRMARM 60
           MS  T+LIVDDD AHR+MLRTMLRGWGYAT+EADDGE+AV KVR++A DAVLMDVRMARM
Sbjct: 1   MSTATILIVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKVRQRAWDAVLMDVRMARM 60

Query: 61  GGIEALRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERALD 120
            GI ALR I+++NPA PVLIMTA+SSV+TAVEALR GAYDYL KPLDFDVLRHTLERALD
Sbjct: 61  DGIAALRHILDWNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALD 120

Query: 121 HTRLVSENRELKSRLDD--AARAPG----IIGRSAPMRELAELVATVAPSEATVLITGES 174
           HTRL SENREL+ RL     A APG    IIGRSAPM EL E++ATVAPSEATVLITGES
Sbjct: 121 HTRLASENRELRERLSSQGGAGAPGASHGIIGRSAPMHELVEMIATVAPSEATVLITGES 180

Query: 175 GTGKELVARSLHEGSRRSAKQLVTVNCAALSESLLESELFGHERGAFTGADKRRDGRFVQ 234
           GTGKELVAR+LH  S RSAK LVTVNCAAL+E+LLESELFGHERGAFTGAD+RR+GRFVQ
Sbjct: 181 GTGKELVARALHAASHRSAKPLVTVNCAALTETLLESELFGHERGAFTGADRRREGRFVQ 240

Query: 235 ADGGTLFLDEIGELPLLLQAKLLRALQQGEIQRVGSDVPLTVDVRLLAATNRDLREEVAA 294
           ADGGTLFLDEIGE+PL LQAKLLRALQQGE+QRVGSD PLTVDVR++AATNRDLREE AA
Sbjct: 241 ADGGTLFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLREEAAA 300

Query: 295 GRFREDLFYRLNVIGIHMPALRERPDDIPLLAAHFLDRYAERNRKHLKGFTPQAMDMLLK 354
           GRFREDL+YRLNVI +H+PALRER  D+PLLAA FLDRY E+NRKHLKGFTPQAMDMLL+
Sbjct: 301 GRFREDLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAMDMLLR 360

Query: 355 HPWPGNVRELENAVERAVIMATGDWVGERELPMSLRGAG---------------GADPAV 399
           H WPGNVRELENA+ERAVI+ATGD+V ERELP+   G G               GA  A 
Sbjct: 361 HDWPGNVRELENAIERAVILATGDYVTERELPLHFGGGGSGIAGSGGSAGTGEAGAGNAP 420

Query: 400 ADAALPTGQDPYAGLSLEDLERRAIVATLRETGDNKSEAARRLGITRATLHNKLKKYDLE 459
           AD     G  PYAGLSLEDLERRAI+ATLRET DNKSEAARRLGITRATLHNKLKKYDLE
Sbjct: 421 ADG---DGLAPYAGLSLEDLERRAIIATLRETADNKSEAARRLGITRATLHNKLKKYDLE 477