Pairwise Alignments

Query, 459 a.a., transcriptional regulatory protein zraR (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 515 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  360 bits (924), Expect = e-104
 Identities = 206/477 (43%), Positives = 289/477 (60%), Gaps = 24/477 (5%)

Query: 6   VLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKVREKARDAVLMDVRMARMGGIEA 65
           +L+VDD+   R  L   L   G+ T  A +G  A+E +     D VL D+ M  M G++ 
Sbjct: 39  ILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQGMDGLDL 98

Query: 66  LRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERALDHTRLV 125
           LR +   +P   V+++T Y +V+TAVEA+  GAY YL KP D +  R  +++AL+  RL 
Sbjct: 99  LRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKALEKRRLR 158

Query: 126 SENRELKSRLDDAARAPGIIGRSAPMRELAELVATVAPSEATVLITGESGTGKELVARSL 185
            E   L+ +L + +    ++G +  M+ L   +A VAPS+ TVLI GE+GTGKEL AR +
Sbjct: 159 QEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKELAARMV 218

Query: 186 HEGSRRSAKQLVTVNCAALSESLLESELFGHERGAFTGADKRRDGRFVQADGGTLFLDEI 245
           H  SRRS  + + +NC A +E LLESELFGHE+GAF+GA ++R G F  A+GGTLFLDE+
Sbjct: 219 HLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGTLFLDEV 278

Query: 246 GELPLLLQAKLLRALQQGEIQRVGSDVPLTVDVRLLAATNRDLREEVAAGRFREDLFYRL 305
           GE+ L +Q KLLRA+Q+  I+RVG    + VDVRLLAATN+DL  E AAGRFR DL+YRL
Sbjct: 279 GEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRHDLYYRL 338

Query: 306 NVIGIHMPALRERPDDIPLLAAHFLDRYAERNRKHLKGFTPQAMDMLLKHPWPGNVRELE 365
           NV+ + MP L ER +D+PLLA +F ++ A    +      P+ + +L ++P+PGNVREL 
Sbjct: 339 NVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPGNVRELH 398

Query: 366 NAVERAVIMATGDWVGERELPMSLR-------GAGG-------ADPAVADAALPTGQDPY 411
           N +ERA ++  GD +   +LP  LR       GAGG       A PA+   A    + P 
Sbjct: 399 NIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLRADEAARMPG 458

Query: 412 AG----------LSLEDLERRAIVATLRETGDNKSEAARRLGITRATLHNKLKKYDL 458
                       ++L++ ER  I   L   G N++ AA+ L I RA+L  KLK+Y L
Sbjct: 459 GAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKRYGL 515