Pairwise Alignments

Query, 459 a.a., transcriptional regulatory protein zraR (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  338 bits (868), Expect = 2e-97
 Identities = 196/461 (42%), Positives = 277/461 (60%), Gaps = 12/461 (2%)

Query: 1   MSDVTVLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKVREKARDAVLMDVRMARM 60
           M+  +VL+V+D+++    ++  L   GY    A D E A + +R++  D V+ D+R+  M
Sbjct: 1   MTKHSVLLVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGM 60

Query: 61  GGIEALRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERALD 120
            G+E L  I E  P   V+++TA+  VE AV+A++ GA+D+L KP   D L   +ER   
Sbjct: 61  NGMELLEGICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLIAVERYFR 120

Query: 121 HTRLVSENRELKSRLDDAARAPGIIGRSAPMRELAELVATVAPSEATVLITGESGTGKEL 180
              L  EN  L+   DD       IG S  M ++ E +  +A S   VL+ G SG+GKEL
Sbjct: 121 FLDLKRENARLRGERDDGE----FIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKEL 176

Query: 181 VARSLHEGSRRSAKQLVTVNCAALSESLLESELFGHERGAFTGADKRRDGRFVQADGGTL 240
           VA +LH  S+R  K  + +NCAAL E LLESELFGHE+GAFTGA + R G+F  ADGGTL
Sbjct: 177 VAGALHRLSKRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTL 236

Query: 241 FLDEIGELPLLLQAKLLRALQQGEIQRVGSDVPLTVDVRLLAATNRDLREEVAAGRFRED 300
           F DE GE+PL +QAKLLR L+  E+  VG ++P  VDVR + AT RDL E + AG FRED
Sbjct: 237 FFDEAGEMPLAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFRED 296

Query: 301 LFYRLNVIGIHMPALRERPDDIPLLAAHFLDRYAERNRKHLKGFTPQAMDMLLKHPWPGN 360
           L+YR+NV+ + +P LRER  D+ LLA  FL R+  ++ + +  F+ QA + LL + +PGN
Sbjct: 297 LYYRINVVPVTLPPLRERGGDVALLAERFLRRFCAQHDRQVT-FSEQARNALLAYDYPGN 355

Query: 361 VRELENAVERAVIMATGDWVGERELPMSLRGAGGADPAVADAALPTGQDPYAGLS--LED 418
           VREL NA+ERAVI+   D +    LP  +R     D   A       +  +  L+  +  
Sbjct: 356 VRELRNAIERAVILCAEDKIHVGHLPKRIR-----DATQASQEQQPEETRFVQLADGVAQ 410

Query: 419 LERRAIVATLRETGDNKSEAARRLGITRATLHNKLKKYDLE 459
            E++ I+  L++TG  +  AA  LGITR  L  KLK+ D++
Sbjct: 411 FEKKRILEALQKTGGRRIRAAELLGITRKQLWLKLKELDIK 451