Pairwise Alignments

Query, 459 a.a., transcriptional regulatory protein zraR (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 448 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  347 bits (889), Expect = e-100
 Identities = 194/454 (42%), Positives = 272/454 (59%), Gaps = 11/454 (2%)

Query: 6   VLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKVREKARDAVLMDVRMARMGGIEA 65
           V IVDD+      L   L   GY  +      + +E + ++  D V  D+R+  M G+E 
Sbjct: 6   VAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDMDGLEL 65

Query: 66  LRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERALDHTRLV 125
           L +I    P   V+I+T Y S++TA+EA+R GA+ Y+TKP++F  +R    RA +   + 
Sbjct: 66  LPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRAQEKIGMR 125

Query: 126 SENRELKSRLDDAARAPGIIGRSAPMRELAELVATVAPSEATVLITGESGTGKELVARSL 185
            EN  L+  L  ++    I+G S  +++L  LV  VAP +  VLI GESGTGK LVA +L
Sbjct: 126 MENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKALVALAL 185

Query: 186 HEGSRRSAKQLVTVNCAALSESLLESELFGHERGAFTGADKRRDGRFVQADGGTLFLDEI 245
           H  S R  +  VT NC   +E L+ SELFG+E+GAFTGA   + G    A GGT+FLDE+
Sbjct: 186 HHLSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTVFLDEV 245

Query: 246 GELPLLLQAKLLRALQQGEIQRVGSDVPLTVDVRLLAATNRDLREEVAAGRFREDLFYRL 305
           GE+PL +Q +LL  LQ+  I RVG   P+ +D+R++AATNRDL+ EV  G FREDLF+RL
Sbjct: 246 GEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFREDLFFRL 305

Query: 306 NVIGIHMPALRERPDDIPLLAAHFLDRYAERNRKHLKGFTPQAMDMLLKHPWPGNVRELE 365
           NV+   +P L +R +DIPLL  HF+D+Y    RK ++G   QA+  L  + +PGNVRELE
Sbjct: 306 NVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGNVRELE 365

Query: 366 NAVERAVIMATGDWVGERELPMSLRGAGGADPAVADAALPTGQDPYAGLSLEDLERRAIV 425
           N +ERAV +  G  +G  +LP  +R    A   +    LPT         L ++ERR ++
Sbjct: 366 NIIERAVALTDGQTIGLLDLPEDIRNLEFA--TLEGDGLPT---------LAEVERRYVI 414

Query: 426 ATLRETGDNKSEAARRLGITRATLHNKLKKYDLE 459
             L +TG NK  AA+ LG+ R TL  KLK+Y +E
Sbjct: 415 RILEKTGYNKRLAAQVLGVPRTTLWRKLKEYGVE 448