Pairwise Alignments

Query, 532 a.a., ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  414 bits (1063), Expect = e-120
 Identities = 225/539 (41%), Positives = 347/539 (64%), Gaps = 22/539 (4%)

Query: 4   VESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEG-RDVIGQAQTGTGKTAAFGLP 62
           +ESFK+L L +E+L+A+E+ GFT P+PIQ  AIP L+EG RD++GQAQTGTGKTAAFG+P
Sbjct: 1   MESFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIP 60

Query: 63  LLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALR 122
           +L+ ID   R+ QAL+L PTRELA+QVA  + ++ K  + + +  VYGGQ I+ Q   LR
Sbjct: 61  ILETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELR 119

Query: 123 RGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQS 182
           RG Q+VVGTPGRILDHI+R T++L  V   VLDEADEML+MGF +D+E IL  +    + 
Sbjct: 120 RGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRM 179

Query: 183 AFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAY 242
             FSAT+PD I++LA+ ++RE ++++V R+QLT   T+Q+++E+    + + + RI D  
Sbjct: 180 LLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTE 239

Query: 243 IPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVATD 302
                ++F  TK  VDE+A  L ++G  A+ LHGD+ Q QRE+ + +F+   I+VLVATD
Sbjct: 240 KEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATD 299

Query: 303 VAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQRV 362
           VAARG+D++D+  V+NFD+P +PE+YVHRIGRTGRAG+ G A +F    +  K + IQ++
Sbjct: 300 VAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKI 359

Query: 363 TGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPTQLAAT 422
             + I R  +P   D   A+  +++  +   L S + + C  +   L+ E ADP ++ + 
Sbjct: 360 AKTEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLL-EDADPQEVLSA 418

Query: 423 LLRMIMQRDRIDL------PGARQTDDIGTG------------RVRLFFNVGRRMRITPR 464
           +L+  ++ +  +        G+++++  G               VRLF  +G+  ++ P+
Sbjct: 419 VLKYALKDELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGENVRLFVALGKLDKMNPK 478

Query: 465 DLVGAIAGETGISGRSIGSIEIHDRFSFVEVDASIAPEVVSVMHGNQIRGFRLAVEQAS 523
            LV  I+ ++ + GR I  +++ ++FSFV V +S A E++     N+ RG R  +E AS
Sbjct: 479 KLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDA-EIILDSFKNERRGRRSIIEVAS 536