Pairwise Alignments

Query, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 385 a.a., multidrug efflux system transmembrane protein from Sinorhizobium meliloti 1021

 Score =  236 bits (601), Expect = 1e-66
 Identities = 141/339 (41%), Positives = 191/339 (56%), Gaps = 4/339 (1%)

Query: 39  PKVTVGAPHVGPVTEYMEFSGTIAAVESVDITARVTGTLRSAQFRDGSTVHKGDPLFIIE 98
           P VTV  P V  V +  EF G   AV+ V I ARV G L    F DG+ V KGD LF+I+
Sbjct: 31  PTVTVAKPVVRDVIDADEFIGRFEAVDEVSIRARVGGYLDQVFFTDGAMVKKGDKLFVID 90

Query: 99  PEPYQAALQRAEAELEVQQAALARAETELARSRKLLTEKAGSETDVVKWQQQRDSAKANI 158
             P++ AL +AEA LE  ++ L  AET   R+  L      S + +   ++   SA+AN+
Sbjct: 91  QRPFRTALSQAEASLEAARSTLVFAETTFKRTESLAGTGTLSVSRLDDDRRALLSAQANV 150

Query: 159 SRAKAQIETARIDLGYTRITAPFDGQISRRFADPGNVVGPGAVTRLATIVRRDQVHVYFN 218
             A+A +E AR+DL YT ITAP  G++ RR   PGN+V     T L TIV  D +  YF+
Sbjct: 151 RGAEAAVERARLDLDYTTITAPLSGRVDRRLISPGNLVQADQ-TVLTTIVSLDPIDFYFD 209

Query: 219 INERDLL---RLMAERPKPKTASAPTMPLELALADEDGFPHAGKLDYADPGVDPATGTMQ 275
           ++ER LL   R   ER       A ++P+ + +AD +  P  GKLD+A+  VD  TGTM+
Sbjct: 210 VDERRLLSYARTARERGSALQEGAGSIPVLVTIADANEPPFEGKLDFAENRVDNETGTMR 269

Query: 276 LRGLFPNPSGRLLPGLFARIRVAVGQSDKAMMVPDRAIGQDQSGSYVIIVNAQNIAEQRA 335
           +R  F NP   L PGLF R+ V    + +A++VPD AI  DQ+   V +V        + 
Sbjct: 270 VRARFANPKFVLQPGLFGRVEVEGSNTYRAVLVPDEAIAADQNERIVYVVGEDGSVATKP 329

Query: 336 VVLGPLHEGYRVVSKGLSAEDRVVVNGIQRARPGSPVDP 374
           V LGP   GYRV+  GL+ ++ VVVNG+ R RPG  V P
Sbjct: 330 VRLGPRLHGYRVIRSGLTGDETVVVNGLMRVRPGVKVKP 368