Pairwise Alignments

Query, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 426 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  192 bits (489), Expect = 1e-53
 Identities = 126/379 (33%), Positives = 195/379 (51%), Gaps = 12/379 (3%)

Query: 19  ATATGIYGCDSRN----AYVPPPPPKVTV--GAPHVGPVTEYMEFSGTIAAVESVDITAR 72
           A +  ++ CDS+     A    P P+VTV   AP    +TE +   G   A  S ++  +
Sbjct: 42  ALSAVLWSCDSQEGGQAAGGARPAPEVTVITAAPQTLRITERLP--GRTVAYRSAEVRPQ 99

Query: 73  VTGTLRSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAEAELEVQQAALARAETELARSRK 132
           V G +    F +G+ V +G  L+ I+P  Y+AAL  A+A+L    A +  A  + AR  +
Sbjct: 100 VNGIILKRLFEEGTEVTEGQQLYQIDPATYKAALDSAKAQLAKADATVKSARAKAARYGE 159

Query: 133 LLTEKAGSETDVVKWQQQRDSAKANISRAKAQIETARIDLGYTRITAPFDGQISRRFADP 192
           L+  KA S  D          + A+++ A+A ++ A I+L YTR+TAP  G+I R     
Sbjct: 160 LVKLKAVSRQDYDDVTATLAESVASVADAQATVDAAEINLAYTRVTAPISGRIGRSAVTE 219

Query: 193 GNVVGPGAVTRLATIVRRDQVHVYFNINERDLLRLMAERPKPKTASAPTMPLELALADED 252
           G +V     T LATI + D ++V    +   LL+L A+       +   +P+ L + D  
Sbjct: 220 GALVTANQATTLATITQLDPINVDLTQSSDKLLKLRAQMANGTVQAPERVPVTLQI-DNS 278

Query: 253 GFPHA--GKLDYADPGVDPATGTMQLRGLFPNPSGRLLPGLFARIRVAVGQSDKAMMVPD 310
           G P+   G L +++  VD  TGT++LR  FPNP+  LLPGLF R  V  G  +   ++P 
Sbjct: 279 GTPYGLTGTLQFSEVVVDETTGTVRLRATFPNPNRILLPGLFVRATVDFGSRENVFLIPQ 338

Query: 311 RAIGQDQSGSYVI-IVNAQNIAEQRAVVLGPLHEGYRVVSKGLSAEDRVVVNGIQRARPG 369
           RA+ +D SG   + ++   + AE+R V          VV++GL   +R+V+ G+Q   PG
Sbjct: 339 RAVVRDASGKAALWVIGDGDKAERRPVTAETTQGTNWVVTEGLKGGERIVIAGLQSMAPG 398

Query: 370 SPVDPTPAPDTGQPAGKPA 388
           + V    AP  GQ AG+PA
Sbjct: 399 AQVKAVAAPPAGQEAGQPA 417