Pairwise Alignments

Query, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 414 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  293 bits (751), Expect = 5e-84
 Identities = 169/404 (41%), Positives = 229/404 (56%), Gaps = 20/404 (4%)

Query: 3   RRHTISRAVHIALLALATATGIY--GCDSRNAYVPPPPPKVTVGAPHVGPVTEYMEFSGT 60
           R  +++ A  I ++AL     I   GC  +N Y  PPP KVTV  P   PVT Y EF+G 
Sbjct: 5   RLASLASARRIGIVALIAGAPIILTGCKEQNKYAAPPPAKVTVAKPTQAPVTLYAEFTGN 64

Query: 61  IAAVESVDITARVTGTLRSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAEAELEVQQAAL 120
            + V SVD+ ARV G L S  + DG  V K   LF IE   YQA +   +A+L+  +A  
Sbjct: 65  TSPVASVDLEARVQGFLESVDYLDGEAVKKDRELFKIEKAQYQAQVDLQQAQLDGAKAKQ 124

Query: 121 ARAETELARSRKLLTEKAGSETDVVKWQQQRDSAKANISRAKAQIETARIDLGYTRITAP 180
           A A+ E  R   L      S+ +V   Q    +A A ++ A+A +  A+  LGYT +TAP
Sbjct: 125 ANAQREADRQTILGQRDVASQRNVDDAQTNLAAANAQVAAAQASLALAKTSLGYTTVTAP 184

Query: 181 FDGQISRRFADPGNVVGPGAVTRLATIVRRDQVHVYFNINE------RDLLRLMAERPKP 234
           FDG ++RR  + G +VG    T+LATI++ D ++VYFNI E      RD L    +  K 
Sbjct: 185 FDGVVTRRLVNVGTLVGSAGPTKLATILQVDPLYVYFNITEQQQINLRDALAKRGKTLKD 244

Query: 235 KTASAPTMPLELALADEDGFPHAGKLDYADPGVDPATGTMQLRGLFPNPSGRLLPGLFAR 294
                  MP+++ALA +  F +AGK+DY  P VDP+TGT+QLRG  PN    L+PGLF R
Sbjct: 245 MREERLEMPIQVALASDTSFQYAGKIDYIAPQVDPSTGTLQLRGTLPNKDVALVPGLFVR 304

Query: 295 IRVAVGQSDKAMMVPDRAIGQDQSGSYVIIVNAQNIAEQRAVVLGPLHEGYRVVSKGLSA 354
           +RVAVGQ D A+++ D A+  +Q+GSYV++V A ++ EQR V LGP     RVV+ GL A
Sbjct: 305 VRVAVGQLDDALLINDTAVMSNQTGSYVMVVGAGDVVEQRQVTLGPQEGQLRVVTSGLKA 364

Query: 355 EDRVVVNGIQRARPG------------SPVDPTPAPDTGQPAGK 386
           +DRVV+  IQRA  G            +P  PTPAP    P  +
Sbjct: 365 DDRVVIGAIQRAIAGNTVTPVAGTMAAAPTAPTPAPAALSPGAQ 408