Pairwise Alignments

Query, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 365 a.a., putative cation efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  199 bits (507), Expect = 8e-56
 Identities = 120/363 (33%), Positives = 186/363 (51%), Gaps = 4/363 (1%)

Query: 16  LALATATGIYGCDSRNAYVPPPPPKVTVGAPHVGPVTEYMEFSGTIAAVESVDITARVTG 75
           L L+  TG        A    P   ++V  P V  +T   ++ G +   ++V++ ARV G
Sbjct: 5   LVLSVLTGCKEKKDTGAMKGMPTLAISVAKPIVKDITLTKDYPGYLTTEKTVNLVARVNG 64

Query: 76  TLRSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAEAELEVQQAALARAETELARSRKLLT 135
           TL+S  +  G  V KG  LF+IEP  Y   + +AEAEL+  QA L  A    +R ++ + 
Sbjct: 65  TLQSVSYAPGGRVKKGQLLFVIEPTLYNDKVAQAEAELKTAQAQLEYARNNYSRMKEAVK 124

Query: 136 EKAGSETDVVKWQQQRDSAKANISRAKAQIETARIDLGYTRITAPFDGQISRRFADPGNV 195
             A S+  V++ +       A +S A+A + TAR +LGY  + APFDG IS+   D G+ 
Sbjct: 125 SDAVSQIQVLQSESSVTEGVAAVSNAEAALSTARTNLGYCYVRAPFDGTISKSTVDIGSY 184

Query: 196 VGPG-AVTRLATIVRRDQVHVYFNINERDLLRLMAERPKPKTASAPTMPLELALADEDGF 254
           VG       LATI + DQ++ YFN+ +   L +     +P       + ++L     + +
Sbjct: 185 VGGSLQPVTLATIYKDDQMYAYFNVADNQWLEMSMNNQQPTKDLPKKIMVQLGKEGTESY 244

Query: 255 PHAGKLDYADPGVDPATGTMQLRGLFPNPSGRLLPGLFARIRVAVGQSDKAMMVPDRAIG 314
           P    LDY  P VD  TGT+ +R  F NP G L  GL+  I +  G++D A++V + +IG
Sbjct: 245 P--ATLDYLSPNVDLNTGTLMVRANFDNPQGVLKSGLYVSITLPYGEADHAILVKEASIG 302

Query: 315 QDQSGSYVIIVNAQNIAEQRAVVLGPL-HEGYRVVSKGLSAEDRVVVNGIQRARPGSPVD 373
            DQ G ++  VN  +I   R + +G L ++  R V  GLS ++R V   + + R G  + 
Sbjct: 303 TDQLGKFLYAVNDSDIVHYRHIEIGQLINDTLRQVLGGLSPQERYVTEALMKVRDGMKIK 362

Query: 374 PTP 376
           P P
Sbjct: 363 PIP 365