Pairwise Alignments

Query, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 412 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  214 bits (545), Expect = 4e-60
 Identities = 129/372 (34%), Positives = 203/372 (54%), Gaps = 7/372 (1%)

Query: 8   SRAVHIALLALATATGIYGCDSRNAYVPPPP--PKVTVGAPHVGPVTEYMEFSGTIAAVE 65
           ++ + I +L    A  +  C    A     P  PKV V       VTE+ EF+G + A E
Sbjct: 4   NQPLRILMLTAVAAFVLSACGEPEAQQGQAPGAPKVDVAQVLHERVTEWDEFTGRLQAPE 63

Query: 66  SVDITARVTGTLRSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAEAELEVQQAALARAET 125
           SV +  RV+G + S  F++G+ V KGD LF I+   ++A + R  A+L    +A   A  
Sbjct: 64  SVTLVPRVSGYIASVNFKEGALVKKGDVLFHIDASVFEAEVARLRADLASALSAEQLATN 123

Query: 126 ELARSRKLLTEKAGSETDVVKWQQQRDSAKANISRAKAQIETARIDLGYTRITAPFDGQI 185
           +L R+RKL  +KA S   +   +  +    A ++  KA +  A +DL YT++ AP DG+ 
Sbjct: 124 DLERARKLFAQKAVSAELLDTRESNKRQTTAAVASVKAALLRAELDLDYTQVRAPIDGRA 183

Query: 186 SRRFADPGNVVGPGAVTRLATIVRRDQVHVYFNINERDLLR---LMAERPKPKTASAPTM 242
           S      GN V  G    L ++V    ++ YF+++E+  L+   L AE+ K K   A   
Sbjct: 184 SYANVTAGNYVSAGQSV-LTSLVSTASMYAYFDVDEQTYLKYVKLTAEK-KRKDPRAGDN 241

Query: 243 PLELALADEDGFPHAGKLDYADPGVDPATGTMQLRGLFPNPSGRLLPGLFARIRVAVGQS 302
           P+ +ALA+E  + H G +D+ D  +D  TGT+++R  F N    LLPGLFAR+R A   +
Sbjct: 242 PVYMALANEREYQHIGLVDFVDNSMDRQTGTIRVRATFSNEDNSLLPGLFARLRTAGSGA 301

Query: 303 DKAMMVPDRAIGQDQSGSYVIIVNAQNIAEQRAVVLGPLHEGYRVVSKGLSAEDRVVVNG 362
              +++ D+A+G D +  +V++V      E R V LG   +G R+V +GL+A+D++VVNG
Sbjct: 302 YDGILIDDKAVGTDLNNKFVLVVANDGTVEYRGVTLGEKVQGLRIVKQGLAADDKIVVNG 361

Query: 363 IQRARPGSPVDP 374
           +QR RP   ++P
Sbjct: 362 MQRVRPKMQIEP 373