Pairwise Alignments

Query, 541 a.a., RND efflux system, outer membrane protein, NodT family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 471 a.a., efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family from Sphingomonas koreensis DSMZ 15582

 Score =  226 bits (575), Expect = 2e-63
 Identities = 166/488 (34%), Positives = 236/488 (48%), Gaps = 36/488 (7%)

Query: 24  LLRACLTPVLLLTLLTACAKVGPDFSAPG--GDVPDVWQDASHPVASSDADVDGTWWNTF 81
           +LR  +T V  LTL  ACA  GPD++AP         +  A+ P     A V G WW  +
Sbjct: 1   MLRNLMTAVSALTL-AACA-TGPDYAAPQTPSAAAGKFVAATGPAVDPLAPVQGEWWKLY 58

Query: 82  NDPVLDSLVTEARSANLSLHLAALRVFEARARLGAAVGNLYPQTQQGTGGLTWTHPS-DR 140
           +DPVLD L+ +A++AN  + +A  R+  ARA L A   +  P      G      P+  R
Sbjct: 59  DDPVLDQLIADAQAANTDIRVAVARLDRARAALRAVKTDRLPDAGVSAGANYGRSPAGQR 118

Query: 141 APTAPQPTTGRDNPDYVQTSAGLDVAWELDFWGKFRRGIEAADADLRASMADHQTALVSV 200
           AP AP+     D        AGL+V++E+D +G+  RG+EAA  DL A+ AD +   V++
Sbjct: 119 APGAPREDWSID--------AGLEVSYEVDLFGRVSRGVEAARGDLGAAEADVEAVRVAI 170

Query: 201 SAEVARSYILYRTVQKQLAIAETNVAIQRESLRIATARFNYGATSERDMRQALSLLRDTE 260
           +AE AR+Y       +++A+AE  VA+   SL +   R   G T+  D  +  +L     
Sbjct: 171 TAETARAYADAAATAERIAVAERIVALLDRSLALTERRHQVGLTTSLDTARIATLRNQRR 230

Query: 261 ARIPNLAHSLRETRNALCVLLGKAPQDI---------SARLGDAPIPTAPTHVAVGIPAD 311
           A IP LA         L  L G+ P D+         + RL D PIP       VG  A 
Sbjct: 231 ADIPALAAERDAALFRLATLTGRVPADLPQIAAQRVATLRL-DQPIP-------VGDGAQ 282

Query: 312 LLRRRPDVHKALATAAGQCARLGVAKADFYPAFTLGGFVGFTASNVGAFGLGDTFSNGFT 371
           LL RRPDV  A    A   AR+GVA AD YP  TLGG +G T  ++     GD F  G  
Sbjct: 283 LLARRPDVRAAERRLAASTARIGVATADLYPRVTLGGSIGSTGPDI-----GDVFGGGPL 337

Query: 372 AY-GGPGLSLPLFNYGRIVSNVRAQDARFQQSLTSYRETVLVALRETEDAIDRFIQAQGR 430
            +  G  ++     + R  + V   +A  + +L  +  TVL AL+ETE A+  + +   R
Sbjct: 338 RWLLGSLINWSFTGHERARAQVAGAEADSRAALAEFDGTVLRALQETETALSAYARTLDR 397

Query: 431 TALLTESASDAARSMQLALIQYQEGSTDFTTVLTAARDLATREDALAAAKGEICQSLVAM 490
              L  +   A ++ ++   Q +EG  D   +L A R  A  E  LAA    I  + + +
Sbjct: 398 RIALQAARDAAEKAARIVRAQQREGQVDGLVLLDAERSFAEAEAELAAIDAGIATTQINL 457

Query: 491 FKALGGGW 498
           FKAL GGW
Sbjct: 458 FKALAGGW 465