Pairwise Alignments

Query, 541 a.a., RND efflux system, outer membrane protein, NodT family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 477 a.a., efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family from Sphingomonas koreensis DSMZ 15582

 Score =  236 bits (601), Expect = 2e-66
 Identities = 164/476 (34%), Positives = 238/476 (50%), Gaps = 30/476 (6%)

Query: 31  PVLLLTL----LTACAKVGPDFSAPGGD---VPDVWQDASHPVASSDADVDGTWWNTFND 83
           P +L+TL    L  CA  GPD+   G     VP  +   +   A +D      WW  F+D
Sbjct: 4   PTILMTLIALPLAGCA-AGPDYRPKGASELGVPSAYSVEARQEAQADLR---QWWAVFDD 59

Query: 84  PVLDSLVTEARSANLSLHLAALRVFEARARLGAAVGNLYPQTQQGTGGLTWTHPSDRAPT 143
           P+L  LV +A + NL +  A  R+ +AR  L  +  +L P    G G       + R   
Sbjct: 60  PLLTRLVEQAATQNLDVAQAVARLRQAREALVQSRASLLPDVSAGAG-------ASRTEG 112

Query: 144 APQPTTGRDNPDYVQTSAGLDVAWELDFWGKFRRGIEAADADLRASMADHQTALVSVSAE 203
               + G  +      S G DV ++ D +G  RRG+EA+ A L AS  D+ T L+S  AE
Sbjct: 113 IAGQSGGTSS-----FSLGADVNYQADLFGGVRRGVEASRAQLDASGYDYATVLISTQAE 167

Query: 204 VARSYILYRTVQKQLAIAETNVAIQRESLRIATARFNYGATSERDMRQALSLLRDTEARI 263
           +AR+YIL R  Q QLA A  ++AIQ ++L IA  R   G  S  D  QA +    T A I
Sbjct: 168 IARNYILARAAQAQLANARDSLAIQDDNLEIAGFRVQAGLVSSLDQEQARASRAQTAASI 227

Query: 264 PNLAHSLRETRNALCVLLGKAPQDISARLGDA-PIPTAPTHVAVGIPADLLRRRPDVHKA 322
           PN+  S     + L VL G+AP  +   +  A P+P  P  +AVGIPAD LR+RPDV  A
Sbjct: 228 PNIEASYNNAVSRLGVLTGQAPGALKGEMEAARPVPQGPAAIAVGIPADTLRQRPDVRAA 287

Query: 323 LATAAGQCARLGVAKADFYPAFTLGGFVGFTASNVGAFGLGDTFSNGFTAYGGPGLSLPL 382
             + A   A +GVA+A  YP+ +LGG +   A N+G  G+ D  +    A     ++  +
Sbjct: 288 ERSLAAAVAGIGVAEARLYPSLSLGGSIDAGAPNLG--GIFDVITGRVFA----NIAQTI 341

Query: 383 FNYGRIVSNVRAQDARFQQSLTSYRETVLVALRETEDAIDRFIQAQGRTALLTESASDAA 442
           F+ GR  S +R+  A    +   Y++TVL AL + E+A+     AQ R    T +   A 
Sbjct: 342 FDAGRTRSQIRSAQAAADGAFYGYKQTVLNALEDVENAVVALQAAQRREREFTIALDAAN 401

Query: 443 RSMQLALIQYQEGSTDFTTVLTAARDLATREDALAAAKGEICQSLVAMFKALGGGW 498
            S  L+   Y+ G  DF T+  +   L +  + L  A+ +   +L+ ++ ALGGGW
Sbjct: 402 NSAILSRSSYRAGLADFLTLSQSESALISARNGLLQARSDQATALIQLYLALGGGW 457