Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

 Score =  132 bits (331), Expect = 9e-36
 Identities = 76/219 (34%), Positives = 120/219 (54%), Gaps = 2/219 (0%)

Query: 36  KEAIVRHYAPKIRFLALRLKAKLPRNVELGELISAGTLGLMEALGKFKPQLGIRFETYAE 95
           ++  +  Y+  ++ +A  L  +LP +V + +LI AG +GL+EA   +    G  FETYA 
Sbjct: 16  QQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAG 75

Query: 96  SRIRGAMLDELRRLDWFPRSLRQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDVR 155
            RIRGAMLD++RR DW PRS+ +  R++ +A+  +E E  R  T+ ++ K   +  +   
Sbjct: 76  IRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYH 135

Query: 156 LGLEALQNQLCLSLE--AMQDSLAGEGGPQSDADPMQTAATQELIERVASLIDELTPREK 213
             L  +     + +E   + D          D  P    A +   + +   I  L  RE 
Sbjct: 136 SVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREA 195

Query: 214 LVLSLYYSDELNMRETAEVMGITEGRVSQLHSQALGRLR 252
           LVLSLYY +ELN++E  EV+G++E RVSQ+ SQ++ RLR
Sbjct: 196 LVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLR 234