Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score = 65.1 bits (157), Expect = 2e-15
 Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 33/225 (14%)

Query: 52  LRLKAKLPRN-----VELGELISAGTLGLMEALGKFKPQLGIRFETYA----ESRIRGAM 102
           LRL  K+ R      + L +LI  G LGL+ A+ KF P+ G RF TYA       I  A+
Sbjct: 100 LRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAL 159

Query: 103 LDELRRLD---WFPRSLRQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDVRLGLE 159
           +++ R +       + L   +R   E  QR++HE        +L +      K +RL   
Sbjct: 160 MNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNER 219

Query: 160 ALQNQLCLSLEAMQDSLAGEGG-------PQS-DADPMQTAATQELIERVASLIDELTPR 211
                    + ++   + G+G        P S +ADP  +    ++ E + + +DEL P+
Sbjct: 220 ---------ISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPK 270

Query: 212 EKLVLSLYYS----DELNMRETAEVMGITEGRVSQLHSQALGRLR 252
           +K VL+  +     +   + E    + +T  RV Q+  + L RLR
Sbjct: 271 QKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315