Pairwise Alignments

Query, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score = 72.8 bits (177), Expect = 2e-17
 Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 10/208 (4%)

Query: 60  RNVELGELISAGTLGLMEALGKFKPQLGIRFETYAESRIRGAM---LDELRRLDWFPRSL 116
           R ++  +LI  G +GLM+A+ KF+ + G +F TYA   IR A+   + +  R    P  +
Sbjct: 409 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 468

Query: 117 RQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDVRLGLEALQNQLCLSLEAMQDSL 176
            + + +L+   +++  E GR    E+L +   + E  +R  L+  +  + +      D  
Sbjct: 469 IETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDED 528

Query: 177 AGEGGPQSDAD---PMQTAATQELIERVASLIDELTPREKLVLSLYYSDELNMRETAEVM 233
           +  G    D     P+ +A    L      ++  LTPRE  VL + +  ++N   T E +
Sbjct: 529 SHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEV 588

Query: 234 G----ITEGRVSQLHSQALGRLRREFRN 257
           G    +T  R+ Q+ ++AL +LR   R+
Sbjct: 589 GKQFDVTRERIRQIEAKALRKLRHPSRS 616