Pairwise Alignments

Query, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 449 a.a., two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  337 bits (865), Expect = 4e-97
 Identities = 195/456 (42%), Positives = 280/456 (61%), Gaps = 14/456 (3%)

Query: 7   ILVIDDEKNYLLVLEALLTDAGYAVTALNDPETALAFLEESEVDVVITDMKMPRVT---- 62
           IL+IDD+      L  +L  AGY    ++ P  A+  +     D+++ DM     T    
Sbjct: 2   ILIIDDDSAVRSSLSFMLKRAGYEAQTVSGPREAMEVVRSVAPDLILMDMNFTLSTTGEE 61

Query: 63  GREVLERVKKTWPHIPVCIMTAFGSIEGAVDVMKYGAFDYITKPFSNDELLLSVQNAAEL 122
           G  +L +VK   P  PV +MTA+GSI+ AV  M+ GAFD+ITKP++N  LL  ++ A EL
Sbjct: 62  GLTLLRQVKIFRPETPVILMTAWGSIQLAVQGMQAGAFDFITKPWNNAALLQRIETALEL 121

Query: 123 SRVHRQYRALRANLEERYGTHQIIGRSKAIREVLDMVDRAAPSRSTVLITGESGTGKELV 182
           +   ++         + +    IIGRS+ + EVL+ + R A + ++VLITGESGTGKEL+
Sbjct: 122 AGSPKE---TTQEQNDAFDRRHIIGRSQGLTEVLNTIARIAKTNASVLITGESGTGKELI 178

Query: 183 ARAIHFSSPRNSGPFVSVNCMALNPGVLESELFGHEKGSFTGAMAMRRGRFEQADGGTLF 242
           A AIH +S R   PFV VN   ++  + ESE+FGH+KG+FT A + R GRFE A+ GT+F
Sbjct: 179 AEAIHINSQRAKQPFVKVNLGGISQSLFESEMFGHKKGAFTDASSDRIGRFEMANKGTIF 238

Query: 243 LDEIGELTPELQVKLLRVLQERRFERVGGGDEIEVDIRVVAATNKDLQKEVENGTFREDL 302
           LDEIG+L P  QVKLLRVLQ++ FE +G     + DIRVV+ATN DL+K V   TFREDL
Sbjct: 239 LDEIGDLDPSCQVKLLRVLQDQTFEVLGDSRPRKTDIRVVSATNADLRKMVGERTFREDL 298

Query: 303 YYRLNVVHVALPPLRERREDIPLLVGHFVEKLARDNGMKPKTFTPEAHDYLTGYEWPGNI 362
           +YR+N++ V LP LRERREDIPLL  HF ++ A  NG     F+ +A  +L+   +PGNI
Sbjct: 299 FYRINLITVRLPALRERREDIPLLARHFADRQAEANGFPRTEFSADALQFLSRLPYPGNI 358

Query: 363 RQLQNVVERCLVLVASDTVGVDDLPPE-IRDEESQLKSAVDLLPVRLDLADTLEKIEAAL 421
           R+L+N+VER +++    T+   D   + IR E+ ++        +      TL++IE   
Sbjct: 359 RELKNLVERTILVNGKPTLDAADFDAQYIRHEDQKVAEGASFAGM------TLDEIERQT 412

Query: 422 IRRALVRAEFVQVKAAELLGISKSLLQYKLKKYGIT 457
           I +AL R +    + A  LGIS++ L  +L+K+GI+
Sbjct: 413 ILQALERHKGNLSQVATALGISRAALYRRLEKFGIS 448