Pairwise Alignments

Query, 616 a.a., DNA polymerase III, gamma and tau subunits, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 688 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  741 bits (1912), Expect = 0.0
 Identities = 412/688 (59%), Positives = 463/688 (67%), Gaps = 87/688 (12%)

Query: 1   MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60
           MS+A LTARYRPQTFAEVAGQETVKAILSRAA E+RVAPAYLFSGTRGVGKTTIARI AK
Sbjct: 1   MSNAPLTARYRPQTFAEVAGQETVKAILSRAAAEDRVAPAYLFSGTRGVGKTTIARILAK 60

Query: 61  ALNCTTAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRY 120
           ALNC  APTGEPCNTCEQCRKV  G HVDVVEIDGASNRGI+DA+RL+EAIGYAPMEGRY
Sbjct: 61  ALNCEKAPTGEPCNTCEQCRKVVMGNHVDVVEIDGASNRGIEDARRLREAIGYAPMEGRY 120

Query: 121 KVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSE 180
           KVFIIDEAHMLTREAFNALLKTLEEPP RVTFVLATTEPHKFPVTI+SRCQHFTF RL E
Sbjct: 121 KVFIIDEAHMLTREAFNALLKTLEEPPPRVTFVLATTEPHKFPVTIISRCQHFTFKRLPE 180

Query: 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
             LEAHLT VL REG D+DPAAVRLIARRAAGSVRDSMSLLGQVLALG  RLT++GARGV
Sbjct: 181 NELEAHLTGVLTREGQDFDPAAVRLIARRAAGSVRDSMSLLGQVLALGGDRLTVEGARGV 240

Query: 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGE 300
           LGLAGQELF  +M+ALA+QDC+ V+ VVR+LLD+GVD+GFFLREL +TWRNLFMLRQAGE
Sbjct: 241 LGLAGQELFFEVMQALASQDCVAVSAVVRDLLDKGVDIGFFLRELASTWRNLFMLRQAGE 300

Query: 301 AALASLDLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLA 360
           AAL +LDLPE+EARQWL WA +FE  HIHACWQMTLEGQRRVLTSLEPAMALELLLLNLA
Sbjct: 301 AALPALDLPEEEARQWLEWAPKFEITHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLA 360

Query: 361 MLPRLMPVESLRPSGG----------------GASAPSGSAAEGPASGGAATIPT----- 399
           MLPRL+ +E L   GG                G     GS   G  +GG  ++P      
Sbjct: 361 MLPRLVSLEQLSRGGGAGPAGGRGMPGGVGGVGGGPAGGSGMPGGGAGGHGSMPPRQGGY 420

Query: 400 --------------------------------------PGTQGMQGTAPAAGMTPSPAAP 421
                                                 PG    Q  + A+ M+ S   P
Sbjct: 421 GGYGAQSGQSGQPGQFGQSGQSGESFPQAQPPQGRYPGPGQVRPQAASSASSMSSSSGVP 480

Query: 422 ATP--------------APSAAPSP-------RVPWDDAAPAPRQTGIPPRPAPRMPEAS 460
             P              AP+AAP+P        +PWDD  P P   G     A  +   S
Sbjct: 481 GAPGMQPAGGFPRPERAAPAAAPAPSRGGSDTSLPWDD-VPYPAPGGAAFGDA-AIGGTS 538

Query: 461 PTAGSPAAPAQGDDSDTAEHTPSGPR-----TWDGFLEFCQGRNGQGGRLATVLRQTTPE 515
              G+P + A   D+      P  P      TW GF+++C  RNG+GG   ++LRQ    
Sbjct: 539 SVPGAPDSVASASDTPDTLGAPDAPAPHEDGTWVGFVQYCVERNGEGGSSLSMLRQAQGH 598

Query: 516 HDDGILRLATMSSVQYERLTDAATRTTLAGLVRDYFGDACRVEVNPPTRVRRTEAELRKE 575
             DG L ++T SS  Y +L+       L    R YFG   RVEV PPT   +T +ELR E
Sbjct: 599 CADGRLTVSTRSSTLYNQLSVPGNEALLVARARAYFGTDVRVEVLPPTTRIKTPSELRAE 658

Query: 576 AEAHPAVQLLKEEMGACILKCTPLADLR 603
           AE HPAV LL+E+ GA +L C PLAD R
Sbjct: 659 AERHPAVSLLREQFGATMLSCRPLADGR 686