Pairwise Alignments

Query, 616 a.a., DNA polymerase III, gamma and tau subunits, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 734 a.a., DNA polymerase III subunit gamma/tau from Ralstonia sp. UNC404CL21Col

 Score =  300 bits (767), Expect = 2e-85
 Identities = 192/539 (35%), Positives = 277/539 (51%), Gaps = 55/539 (10%)

Query: 1   MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60
           MS+  L  ++RP+ F  + GQE V   L+ A ++ R+  AYLF+GTRGVGKTT++RI AK
Sbjct: 1   MSYQVLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60

Query: 61  ALNCTTAP-----TGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAP 115
           +LNC  A      T +PC  C  C ++  G  VD +E+D ASNRG+D+  +L +   YAP
Sbjct: 61  SLNCVGADGQGGITAQPCGVCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDRAVYAP 120

Query: 116 MEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTF 175
             GR+KV++IDE HMLT  AFNA+LKTLEEPP  V F+LATT+P K PVT++SRC  F  
Sbjct: 121 TSGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 180

Query: 176 TRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTID 235
            ++    + +HL ++LG EG+ ++P A+RL+A  A GS+RD++SL  Q +A     ++  
Sbjct: 181 KQMPPGHIVSHLDRILGEEGIAHEPNALRLLAAAAQGSMRDALSLTDQAIAYSAGEVSEA 240

Query: 236 GARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFML 295
             RG+LG   Q   +RL++ALA ++   +  +  E+  R +     L++L +  + +  L
Sbjct: 241 AVRGMLGAIDQSYLVRLLDALADENGAALVEIADEMAGRSLSFSGALQDLASLLQKI-AL 299

Query: 296 RQAGEAALASLDLPE-DEARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALEL 354
            Q   AA+   D PE D+ R+    A+RF+   +   +Q    G+  +  + +      +
Sbjct: 300 AQVVPAAVQD-DWPEADDVRR---LAERFDAQSVQLFYQFANLGRNELALAPDEYAGFTM 355

Query: 355 LLLN-LAMLPRLMPVESLRPSGGGASAPSGSAAEGPASG--GAATIPTPGTQGMQGTAPA 411
            LL  LA  P     ++  PSGGG    +   A  PA+    A T   P T  +   AP 
Sbjct: 356 TLLRMLAFQPGQSGGDAAPPSGGGGGKRAMPLAATPATSTRPAVTATAPITAPVTQAAPV 415

Query: 412 A-------------------GMTPSPAAPATPAPSAAPSPRVPWDDAAPAPRQTGIPPRP 452
           A                      P P A A  AP+AAP+ R P  +A  A RQ     R 
Sbjct: 416 ATRAEPMVEAPRATYQATPTAPAPVPVAAAVQAPAAAPARRSPAMEALAAARQASSRGRG 475

Query: 453 APRMPEASPTAG---------------SPAAPA-----QGDDSDTAEHTPS--GPRTWD 489
               P A+P A                +PA PA     Q  +   A   PS  GP  WD
Sbjct: 476 GASAPAATPVAAPAPVARPAPVAGPRPNPAVPASTSSPQRREPPVAAAAPSDDGPPPWD 534



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 71/266 (26%), Positives = 95/266 (35%), Gaps = 54/266 (20%)

Query: 378 ASAPSGSAAEGPASGGAATIPTPGTQGMQGTAPAAGMTPSPAAPAT---------PAPSA 428
           A+  + S   G AS  AAT P      +   AP AG  P+PA PA+         P  +A
Sbjct: 465 AARQASSRGRGGASAPAAT-PVAAPAPVARPAPVAGPRPNPAVPASTSSPQRREPPVAAA 523

Query: 429 APSPR--VPWD--------------DAAPAPRQTGIPPRPAPRMPEASP-------TAGS 465
           APS     PWD              DAA A   +    RP    P A P        A +
Sbjct: 524 APSDDGPPPWDEMPGELASPSLEEMDAAFAGWDSASSVRPGAPEPAARPAQIEAPVAASA 583

Query: 466 PAAPAQGDDSDTAEHTP-----SGPRTWDGFLEFCQGRNGQGGRLATVLRQTTPEHDDGI 520
           PA          A  TP     SG  T+DG            G    + +Q   + +   
Sbjct: 584 PAPTKAVPPEPVAAATPPDLSASGLTTFDGNWPALAASLPIRG----LAQQLAYQSELAA 639

Query: 521 LRLATMS-SVQYERLTDAATRTTLAGLVRDYFGDACRVEVN-PPTRVRRTEAELRKEAE- 577
           +  ATM   V    LTDA     L   + ++FG   RV  +  P R      +  + AE 
Sbjct: 640 VEGATMRLRVPLPPLTDANVVERLEAALTEHFGTPVRVACDIGPARATAAAVDAEQRAER 699

Query: 578 ---------AHPAVQLLKEEMGACIL 594
                    A+P VQ L  +  A ++
Sbjct: 700 QRNAEEAIAANPFVQALVRDFAAQVV 725