Pairwise Alignments

Query, 616 a.a., DNA polymerase III, gamma and tau subunits, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 913 a.a., DNA polymerase-3 subunit gamma/tau from Paraburkholderia bryophila 376MFSha3.1

 Score =  294 bits (753), Expect = 1e-83
 Identities = 178/484 (36%), Positives = 258/484 (53%), Gaps = 26/484 (5%)

Query: 1   MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60
           M++  L  ++RP+ FA + GQE V   L+ A    R+  AYLF+GTRGVGKTT++RIFAK
Sbjct: 1   MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60

Query: 61  ALNCTTAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRY 120
           ALNC T  T  PC  C  CR++ +G  VD VE+D ASNRG+D+   L E   YAP++ R+
Sbjct: 61  ALNCETGVTSTPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120

Query: 121 KVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSE 180
           KV++IDE HMLT  AFNA+LKTLEEPP  V F+LATT+P K PVT++SRC  F   ++  
Sbjct: 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180

Query: 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
             + +HL  +LG E V Y+  A+RL+AR A GS+RD++SL  Q +A   +++  +  RG+
Sbjct: 181 GHIVSHLEHILGEEKVPYEAQALRLLARAADGSMRDALSLTDQAIAYSANQVNEEAVRGM 240

Query: 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGE 300
           LG   Q   +RL++ALA  D   V +V  E+  R +     L++L +    +   + A  
Sbjct: 241 LGALDQSYLIRLLDALAEGDGAAVLSVADEMALRSLSFSTALQDLASLLHRIAWAQFAPS 300

Query: 301 AALASLDLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLA 360
           + L        EA     +A+      +   +Q+   G+  +  + +      + LL   
Sbjct: 301 SVLDEW----PEAGDLRRFAETLSAEQVQLFYQIATIGRSELGLAPDEYAGFTMTLL--- 353

Query: 361 MLPRLMPVESLRPSGGGASAPSGSAAEGPASGG-AATIPTPGTQGMQ--GTAPAAGMTPS 417
              R++  E     GGGA+ P   A +  ASGG  A  P     G+    TAP   +   
Sbjct: 354 ---RMLAFEPAPTGGGGAAGPGRQAGQTGASGGKRAGTPAVAAAGLSAANTAPPVLLAAG 410

Query: 418 PAAPATPAPSAAPSPRVPWDDAAPAPRQTGIPPRPAPRMPEASPTAGSPAAPAQGDDSDT 477
           P    +PA  A    RV    A  AP   G       +  + + +  + +AP     SD 
Sbjct: 411 PRGAVSPAEPAREPGRVA-GAAEDAPASAG-------QRRDIAASTQAVSAP-----SDV 457

Query: 478 AEHT 481
           A+HT
Sbjct: 458 AQHT 461



 Score = 33.5 bits (75), Expect = 4e-05
 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 378 ASAPSGSAAEGPASGGAAT-IPTPGT-QGMQGTAPAAGMTPS-PAAPATPAPSAAPSPR- 433
           ASA +  AA  PA+      +PTPG  +G      A+G   S  AAPA PA      P  
Sbjct: 642 ASANASPAAPKPAAPRVVVPVPTPGAPRGAAQPESASGARASAAAAPAQPAARKESQPNG 701

Query: 434 ---VPWDDAAP 441
               PWDD  P
Sbjct: 702 SAVPPWDDMPP 712