Pairwise Alignments

Query, 616 a.a., DNA polymerase III, gamma and tau subunits, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 893 a.a., DNA polymerase III subunit gamma/tau from Burkholderia phytofirmans PsJN

 Score =  290 bits (741), Expect = 2e-82
 Identities = 169/445 (37%), Positives = 242/445 (54%), Gaps = 15/445 (3%)

Query: 1   MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60
           M++  L  ++RP+ FA + GQE V   L+ A    R+  AYLF+GTRGVGKTT++RIFAK
Sbjct: 1   MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60

Query: 61  ALNCTTAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRY 120
           ALNC T  T  PC  C  CR++ +G  VD VE+D ASNRG+D+   L E   YAP++ R+
Sbjct: 61  ALNCETGVTSTPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARF 120

Query: 121 KVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSE 180
           KV++IDE HMLT  AFNA+LKTLEEPPA V F+LATT+P K PVT++SRC  F   ++  
Sbjct: 121 KVYMIDEVHMLTNHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180

Query: 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
             + +HL  +LG E V YD  A+RL+AR A GS+RD++SL  Q +A   +++  +  RG+
Sbjct: 181 GHIVSHLEHILGEEKVPYDAQALRLLARAADGSMRDALSLTDQAIAYSANQVNEEAVRGM 240

Query: 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGE 300
           LG   Q   +RL++ALA  D   V +V  E+  R +     L++L +    +   + A  
Sbjct: 241 LGALDQSYLIRLLDALADGDGAAVLSVADEMALRSLSFSTALQDLASLLHRIAWAQFAPS 300

Query: 301 AALASLDLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLA 360
           + L        EA     +A+      +   +Q+   G+  +  + +      + LL   
Sbjct: 301 SVLDEW----PEAADLRRFAEALSAEQVQLFYQIATIGRSELGLAPDEYAGFTMTLL--- 353

Query: 361 MLPRLMPVESLRPSGGGASAPSGSAAEGPASGGAATIPTPGT---QGMQGTAPAAGMTPS 417
              R++  E     GGG +A S  A     + GA     P     QG  G    A  TP+
Sbjct: 354 ---RMLAFEPAPTGGGGGAAGSARAPGQAGANGAKRAGAPAVAARQGASGLPATAAATPA 410

Query: 418 PAAPATPAPSAAPSPRV--PWDDAA 440
            A+    + +A    R   P D AA
Sbjct: 411 SASSRDASVNATAPVRETRPGDAAA 435



 Score = 40.8 bits (94), Expect = 3e-07
 Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 19/118 (16%)

Query: 381 PSGSAAEGPASGGAATIPTPGTQGMQ-----GTAPAAGMTPSPAAPATPAPSAAPSPRVP 435
           P+  +A   A G +A +    + G++     G A AA  T  PAAPATP P+    PRV 
Sbjct: 586 PAADSAPRRAGGASAALDVLRSAGLKVSSDRGRATAAA-TAKPAAPATPKPAV---PRV- 640

Query: 436 WDDAAPAPRQTGIPPRPAPRMPEASPTAGSPAAPAQGDDS----DTAEHTPSGPRTWD 489
                P P  T   PR AP+   A   + +PAA      +    + AE   +    WD
Sbjct: 641 ---VVPVP--TPGAPRRAPQQDAAPAASAAPAARTSASSAPAQRNGAEQNGASAPPWD 693



 Score = 29.6 bits (65), Expect = 6e-04
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 372 RPSGGGASAPSGSAAEGPASGGAAT-IPTPGTQG---MQGTAPAAGMTPSPAAPATPAPS 427
           R +    + P+  A   PA       +PTPG       Q  APAA   P+    A+ AP+
Sbjct: 618 RATAAATAKPAAPATPKPAVPRVVVPVPTPGAPRRAPQQDAAPAASAAPAARTSASSAPA 677

Query: 428 AAPSPRVPWDDAAPAPRQTGIPP 450
                     + A AP    +PP
Sbjct: 678 QRNGAE---QNGASAPPWDDMPP 697



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 381 PSGSAAEGPASGGAATIPTP-GTQGMQGTAPAAGMTPSPAAPATPAPSAAPSPRVPWDDA 439
           P+  +A G A+  +A+  TP         AP        +  A P  S       P DD+
Sbjct: 495 PAPLSAVGDAAAASASPATPTAALAPWDDAPTDSAANEASVAAVPNGSETNDVAAPLDDS 554

Query: 440 APAPRQTGIPPRPAPRMPEASPTAGSPAAPAQGDDS 475
           APA   +        R  +A+  +     P    DS
Sbjct: 555 APASSLSAPAAAALARTEQAAAASQESQEPPPAADS 590