Pairwise Alignments

Query, 303 a.a., DNA-binding domain, excisionase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 301 a.a., conserved domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  129 bits (325), Expect = 6e-35
 Identities = 96/302 (31%), Positives = 149/302 (49%), Gaps = 21/302 (6%)

Query: 5   LSTREVAAYLGINEKMVYALVTEKGLPGTKVTGKWLFPLHLVDAWLERNTLNHPGQPGDG 64
           +S ++VA YL +NEK VYA+  ++ LP TK+TGKWLFP  L+D W+  +   H G   D 
Sbjct: 10  MSAKQVAEYLDLNEKKVYAMANDRILPATKITGKWLFPKVLIDRWVMDSC--HSGMLTD- 66

Query: 65  ETGQALVLAGSNDILLDRAL-RLFAQLHPGRLAAFVNLGSLGGLHALRDGLCHMATSHLM 123
                L++ GS+D LL   + RL AQ+    L ++   GS  GL  L  G   + T H  
Sbjct: 67  ----RLLITGSDDPLLSMLVARLMAQVGSRELISYSATGSRLGLELLAKGYADVCTLHWG 122

Query: 124 QAEGHEYNFDTAQRVLD--EPPAVVNFCIREQGYLTAPGNPHGIADAGDIAARGLRVANR 181
             E          +  +  +   +V+   R+QG +  P   HG  +   +     R  +R
Sbjct: 123 SMEDRNIRHPALLKGYNNHQQWIMVHGYSRQQGLIMRPDMHHGCQEEDKVLTLPWRWVSR 182

Query: 182 PHGTGTRLLFDAELTRHG--VDPARV--PGYG-REFAGHIDVGMEIVAGRADVAPCIRAV 236
             G G++   +  L +HG  +D   V    Y  RE AG+      I  G AD+    ++V
Sbjct: 183 QGGAGSQQHLEQWLLKHGARLDQLNVVLTAYSERELAGY------IARGDADIGFGCQSV 236

Query: 237 AGLLGLGFVPLQRERYDLLVPRAGYFDKRVQLFIAMLGDPRFRSLTDDLDGYDLSKSGRV 296
           A   GL FVPL +E +D ++P++ YF +++Q    ML     R +   L GYDL+  G++
Sbjct: 237 ALESGLSFVPLIKESFDFVMPQSIYFRRQLQQLFTMLSSGHTRQMAALLGGYDLTDCGQL 296

Query: 297 VF 298
           ++
Sbjct: 297 LW 298