Pairwise Alignments

Query, 129 a.a., cytochrome c3 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 556 a.a., cytochrome c class III (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 47.0 bits (110), Expect = 4e-10
 Identities = 37/101 (36%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 15  AFALPVVAAPKAPADGLKMEATKQPVVFNHSTHKSVK--CGDCHHPVNGKEDYRKCGTAG 72
           A  LPVV  P A      M+   +PV FNH  H++    C  CHH    K D   C T  
Sbjct: 278 AMVLPVVG-PGAKDTPKGMKGAMKPVAFNHKVHEAASNTCRACHHV---KID--NCTT-- 329

Query: 73  CHDSMDKKDKSAKGYYHVMHDKNTKFKSCVGCHVEVAGADA 113
           CH     KD +       MH  ++  KSCVGCH +   A A
Sbjct: 330 CHTLEGVKDGNFVQIEKAMHQPDS-MKSCVGCHNQKVQAPA 369



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 34/125 (27%)

Query: 24  PKAPADGLKMEATKQPVVFNHSTHKSV--------KCGDCHHP----------VNGKEDY 65
           PK  A   K     + + F H   K++         CG CHH           V  KED 
Sbjct: 145 PKPMASSWKQIGLDKSLHFRHVAAKAIAPVNDPQKNCGACHHVYDEAAKKLSWVKNKED- 203

Query: 66  RKCGTAGCH-DSMDKKDKSAKGYYHVMHDKNTKFKSCVGCHVEVAGADAAKKKDLTGCKK 124
                  CH D+  +K  S +   H           C+ CH  VA A A        C  
Sbjct: 204 ---SCRACHGDARVEKKPSLREAAHTQ---------CITCHRSVAAAPAKADSGPVSC-- 249

Query: 125 SKCHE 129
           + CH+
Sbjct: 250 AGCHD 254



 Score = 30.8 bits (68), Expect = 3e-05
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 21/88 (23%)

Query: 46  THKSVKCGDCHHPVNGKEDYRKCGTAGCH----DSMDKKDKSAKGYYHVMHDKNTKFKSC 101
           T K+  C  CHH     +   KC  A CH    D+        K  YH         + C
Sbjct: 482 TDKATVCAGCHHNSPASKTPPKC--ASCHGQPFDAAKGDRPGLKAAYH---------QQC 530

Query: 102 VGCHVEVAGADAAKKKDLTGCKKSKCHE 129
           +GCH  +      +K   T C  ++CH+
Sbjct: 531 MGCHNRM----KLEKPADTAC--AECHK 552



 Score = 28.5 bits (62), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 15/68 (22%)

Query: 66  RKCGTAGCHDSMDKKDKSAKGYYHVMHD------KNTKFKSCVGCHVEVAGADAAKKKDL 119
           ++C T  CH + DK   S K  +  + D      KN    +C+GCH E   A A KK   
Sbjct: 81  KECAT--CHKNDDKGKMSLK--FMRLEDTTAADLKNIYHANCIGCHTE--QAKAGKK--- 131

Query: 120 TGCKKSKC 127
           TG +  +C
Sbjct: 132 TGPQDGEC 139