Pairwise Alignments

Query, 963 a.a., methyl-accepting chemotaxis protein DcrH (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  345 bits (884), Expect = 9e-99
 Identities = 248/836 (29%), Positives = 394/836 (47%), Gaps = 104/836 (12%)

Query: 1   MTLKRKLMVGFILALFVTCTLIAGV--NWYFAHDGMNGIGDTAVEAMKDRARGQLESIRS 58
           M +  K+++   L L +   +IAGV   W  A          + +A+ +RA  QL S+R 
Sbjct: 1   MKIANKIVLSMTL-LSIFSVVIAGVWVGWSAA--------TLSKQAIYERASNQLLSVRE 51

Query: 59  AKALHIEDLFQRIRNQTRTLAESLTVREAATTLSAAYFTVQGETTGALDAKALRGKLTED 118
            K   IE    R+  Q  TLA  ++  EA  +L+ AY     E   A    AL+   T  
Sbjct: 52  TKKSEIERYLTRVAGQLVTLANMVSTVEAMESLTQAYQAYPVEQVPASSLSALKDYYTTQ 111

Query: 119 YAGANYLANPTFATHARTAKGYAPRPAETYLPKDANGIILQAMYVHPSGNPNPLGEKHRL 178
           + G NY          +   G    P         +   LQA Y+  + NPNPLG KH  
Sbjct: 112 F-GQNY---------QKLNDGQDANPLARLSLLSRSAEALQARYI--ASNPNPLGAKHEW 159

Query: 179 DANPLASTYNTLHRKYHPILRNYLTTFGYYDIFIIDAASGVIVYTVFKEKDYATSLLTGP 238
           +++ L + Y+ LH+KYHP ++ YL  FG YD+F++D   G +VYTVFKE D+AT+LL+GP
Sbjct: 160 ESDSLGNAYDALHQKYHPGIKQYLEQFGLYDVFMVD-NDGHVVYTVFKELDFATNLLSGP 218

Query: 239 YRDTGLGAVFREAVENGRKGRRDAVSISDFAPYEPSYNAPAAFIAAPVFDDRGTCQAVLA 298
           Y+++GL   + +A    +    +   + DFAPY PSY A A+FI+ P+F+   T   VL 
Sbjct: 219 YKESGLARAYVQA----KTLANNQYYLDDFAPYYPSYEAAASFISTPIFNG-STRVGVLI 273

Query: 299 FQMPVDNIDRIMTSNGRWQEVGLGTTGETYLVGPDMHPRS-------------------- 338
           FQMPVD I+ IMT + RW+E GLG TG++YLVG D   RS                    
Sbjct: 274 FQMPVDEINSIMTFDSRWKENGLGNTGQSYLVGSDHLMRSQPRLLLEDASAFIGTLNSLT 333

Query: 339 -------KLRAASGASDEVVVDSEAARKALGGESGTATIRDYRGKNVLAAWQPLRLEGLH 391
                  ++R+   A   + V S+A  KAL GESG      +    +L+A+ PL   GL 
Sbjct: 334 GDRAAINQIRSKQSAIGLLKVSSQAVDKALRGESGLMMESTHASVQLLSAYTPLDALGLR 393

Query: 392 YGLIAEIDIDEALLAASKITAARQGAEARTLWGTLLVLALGTLLGSGIAIALVGALSRPL 451
           + L+ E+  DEAL   +K++          +   L+ + +G ++ +  A  +   +S+P+
Sbjct: 394 WALVTEMQADEALADIAKLS-------DELIMKVLIAIVIGAVIATLAAWMVGNGISKPI 446

Query: 452 QRLQVYAGDVAAGNLDARPEGQYPAELDAMRHSIESMVQNLRMRIHEADAKGMEAADSAQ 511
           +                                 +S+ Q  RM    +    +    S Q
Sbjct: 447 R---------------------------------DSISQIQRM----SRDNDLTVRLSEQ 469

Query: 512 AAQAALDKARASETRIKGLMERMTGAAGKARSVSEHVSRSINDLTAQVHTITQGVETQRH 571
            +      A+A    +  L + +   A     ++ H     +++T   +++++    Q  
Sbjct: 470 GSDEIRQLAQALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNMTGTRNSVSE----QHE 525

Query: 572 RMDDTAQAMDTMRTMVSDVADNARRAAEQADLSRGHAQQGASGVGEAVASIGQVRERIER 631
           R D    A++ M   +++V++ A+RAA     +      G S   E    +  + +++  
Sbjct: 526 RTDSVVTAVNEMSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELARDMTSINQQMAS 585

Query: 632 LNTAMARLGEEADSIGKVMSVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKL 691
              A+ARL  E+ SI  V+ VI  IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR L
Sbjct: 586 AVEAIARLNHESQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNL 645

Query: 692 AEKTMQATGEVGSAVTRIQTHTRDNIAAVETAMREATASADAATASGRVMDDIVSRVDET 751
           A KT  +T E+ + + R+Q  T+  +  +E A            ++  ++  IV  ++E 
Sbjct: 646 AAKTQTSTEEIRTKIDRLQKETQSVVNCIEEANNTVVRGVATCHSNTDMLKQIVDMLNEL 705

Query: 752 AGMVQSIAAASDQQAAAATMVGRNVEEVNAIAGDTAASMSHFAGTLEDIFSQVQEL 807
             M   IA A++QQ      +  N+  ++ ++      +      + ++  +  EL
Sbjct: 706 NEMNIQIATATEQQRGVTEEINANITSISDVSASVTVQVGEVNAIVNELSDEAMEL 761



 Score = 48.9 bits (115), Expect = 1e-09
 Identities = 77/345 (22%), Positives = 131/345 (37%), Gaps = 40/345 (11%)

Query: 500 DAKGMEAA--DSAQAAQAALDKARASETRI-KGLMERMTGAAGK---ARSVSEHVSRSIN 553
           DA G+  A     QA +A  D A+ S+  I K L+  + GA      A  V   +S+ I 
Sbjct: 388 DALGLRWALVTEMQADEALADIAKLSDELIMKVLIAIVIGAVIATLAAWMVGNGISKPIR 447

Query: 554 DLTAQVHTITQG----VETQRHRMDDTAQAMDTMRTMVSDVADNARRAAEQADLSRGHAQ 609
           D  +Q+  +++     V       D+  Q    +  M+S + D   + A   D    H Q
Sbjct: 448 DSISQIQRMSRDNDLTVRLSEQGSDEIRQLAQALNRMLSHLQDTICQFAHTTDKLNSHTQ 507

Query: 610 QGASGVGEAVASIGQVRERIERLNTAMARLGEEADSIGKVMSVISDIADQTNLLALNAAI 669
                +     S+ +  ER + + TA          + ++ + I+++++     A  AA 
Sbjct: 508 TITHNMTGTRNSVSEQHERTDSVVTA----------VNEMSASITEVSE----FAQRAAT 553

Query: 670 EAARAGDAGRGFAVVADEVRKLAEKTMQATGEVGSAVTRIQTHTRDNIAAV--------- 720
               A   G G   V +E+ +      Q       A+ R+  H   +IA+V         
Sbjct: 554 FVQEANQKGHGGVSVGNELARDMTSINQQMASAVEAIARLN-HESQSIASVLDVIQAIAE 612

Query: 721 ETAMREATASADAATAS--GR----VMDDIVSRVDETAGMVQSIAAASDQQAAAATMVGR 774
           +T +    A+ +AA A   GR    V D++ +   +T    + I    D+       V  
Sbjct: 613 QTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAAKTQTSTEEIRTKIDRLQKETQSVVN 672

Query: 775 NVEEVNAIAGDTAASMSHFAGTLEDIFSQVQELFSMIEVISTGEE 819
            +EE N       A+       L+ I   + EL  M   I+T  E
Sbjct: 673 CIEEANNTVVRGVATCHSNTDMLKQIVDMLNELNEMNIQIATATE 717