Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 474 a.a., sigma-54 dependent transcriptional regulator/sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  245 bits (625), Expect = 3e-69
 Identities = 148/395 (37%), Positives = 221/395 (55%), Gaps = 34/395 (8%)

Query: 10  RGIIDTLNEGLVFVGPDGRIRMVNPALERLTGFTRDELVGRACSVLQCDACVRQRKDGGA 69
           R ++D ++EG+     DG    +NPA ER+TG+  DEL+G+                 G+
Sbjct: 12  RLLLDAVSEGIYGFDLDGHAVFINPAAERMTGWQADELLGKTIHNFH-----HHSHADGS 66

Query: 70  HW----CRLF----DRKGENRKRCTVRRKDGTVVPV-LKNARVLTDGQGGVQGAVEIITD 120
           H+    C ++    D K          RKDG+  PV   +  V  DG+  ++G V I  D
Sbjct: 67  HYPHEDCPIYQTLKDGKAREISDEVFWRKDGSSFPVHYSSTPVWQDGK--LKGVVAIFRD 124

Query: 121 LSELVDKER-------RIEELSRLLGSEE-----------GFAGMVGASSAMHRTFRLLE 162
           +S     E+       +++ LS  L SE            G + + G+S  +    + + 
Sbjct: 125 ISLQKQTEQSLRQALEQVQALSEQLASENSLLQAELEDKRGPSQITGSSDCIQNLQKQIR 184

Query: 163 RAAESDAPVLLLGASGTGKELAARAVHELGRRRNGPYVQLNCAALNENLLESELFGHVRG 222
             A +D+ VL+ G +GTGKEL AR +H+L  RR+ P + +NCAA + +LLESELFGH +G
Sbjct: 185 LVANTDSTVLIQGENGTGKELVARELHQLSSRRDKPMISVNCAAFSASLLESELFGHEKG 244

Query: 223 AFTGAVRDRQGRFEAAHGGDLFLDEIGDLPLPTQVKLLRVLETKRIERVGDNHPREVDVR 282
           AFTGA   R+GRFE AH G LFLDE+ +L L  Q KLLRV++ +  ERVG +   +VD+R
Sbjct: 245 AFTGASNRRKGRFELAHKGTLFLDEVAELSLEAQSKLLRVIQEQEFERVGGSERIKVDIR 304

Query: 283 IIAATNRNLGALVRAGRFREDLLFRINVIPVTLPALAARREDIPLLAAFFLRAITERDGR 342
           +IAAT+ +L   V  G FR DL +R+NV P+ +P L  R  DIP L    LR+++++ G+
Sbjct: 305 LIAATHHDLQKRVEQGLFRMDLFYRLNVFPLKVPPLRQRAGDIPELVQQLLRSLSQKLGK 364

Query: 343 KAGGLTPAALRHLVAYTWPGNVRELRSAMEYACVV 377
              G+   +L+ L  Y+WPGNVREL++ +E   ++
Sbjct: 365 PLAGVDAVSLKRLQQYSWPGNVRELQNLLEREAIL 399