Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 448 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  245 bits (625), Expect = 3e-69
 Identities = 130/263 (49%), Positives = 176/263 (66%), Gaps = 3/263 (1%)

Query: 129 RRIEELSRLL---GSEEGFAGMVGASSAMHRTFRLLERAAESDAPVLLLGASGTGKELAA 185
           RR+EE +R L   G     A ++G S+A+    +++ R A +   VLLLG SGTGKE+ A
Sbjct: 128 RRLEEENRQLARAGHAGPLANVIGESAAIQAVCQMVRRVASTTVNVLLLGESGTGKEVFA 187

Query: 186 RAVHELGRRRNGPYVQLNCAALNENLLESELFGHVRGAFTGAVRDRQGRFEAAHGGDLFL 245
            ++H+L  R   P+V +NCAA+ ENLLESELFGH +GAFTGA+R   G+ + A+GG LFL
Sbjct: 188 HSLHQLSGRAGQPFVAINCAAIPENLLESELFGHEKGAFTGALRQTTGKIQQANGGTLFL 247

Query: 246 DEIGDLPLPTQVKLLRVLETKRIERVGDNHPREVDVRIIAATNRNLGALVRAGRFREDLL 305
           DEIGD+P P Q KLLR L+++ IERVG     EVDVRI++ATNR+LGAL+  G FREDL 
Sbjct: 248 DEIGDMPPPLQAKLLRFLQSRVIERVGGRQSLEVDVRIVSATNRDLGALIEKGEFREDLY 307

Query: 306 FRINVIPVTLPALAARREDIPLLAAFFLRAITERDGRKAGGLTPAALRHLVAYTWPGNVR 365
           +R++ + + LP L  R ED PLLA +FL +     GRK  G +  A   L A+ WPGNVR
Sbjct: 308 YRLDEVKIALPPLRDRIEDAPLLAQYFLDSFAASMGRKVTGFSSDAQVALSAHPWPGNVR 367

Query: 366 ELRSAMEYACVVAGGGDIDAEHL 388
           EL + ++ A V+A G  + A+ +
Sbjct: 368 ELENRVKRAVVLAEGRLVTAKDM 390



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 511 PTQRELREGEERRQLLTALRRARGNISEAARLLGVYRGTVRNRMARYGI 559
           PT RE R   + + + TAL  A  N+S AA+ LG+ R T+ + +  + I
Sbjct: 398 PTLRESRRRADYQAVTTALLLAGNNLSLAAKYLGISRPTLYDLIETHNI 446