Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 543 a.a., sigma-54-dependent Fis family transcriptional regulator from Rhodopseudomonas palustris CGA009

 Score =  246 bits (628), Expect = 2e-69
 Identities = 139/298 (46%), Positives = 191/298 (64%), Gaps = 7/298 (2%)

Query: 99  KNARVLTDGQGGVQGAVEIITDLSELVDKERRIEELSRLLGSE--EGF--AGMVGASSAM 154
           ++  VL+     +  AVE+   L E VDK R +E  +R L SE  E F  + ++G S  M
Sbjct: 170 QDVEVLSTIASMIAPAVELY--LLENVDKVR-LENENRRLQSELKERFKPSNIIGNSKPM 226

Query: 155 HRTFRLLERAAESDAPVLLLGASGTGKELAARAVHELGRRRNGPYVQLNCAALNENLLES 214
              + L+++ A +   VL+LG SG GKEL A A+H      +GP+V+ NCAAL EN++ES
Sbjct: 227 QAVYDLIQKVATTKTTVLILGESGVGKELVANAMHYNSGNADGPFVKFNCAALPENIVES 286

Query: 215 ELFGHVRGAFTGAVRDRQGRFEAAHGGDLFLDEIGDLPLPTQVKLLRVLETKRIERVGDN 274
           ELFGH +G+FTGAV  R+GRFE A GG +FLDE+G+L LP Q KLLRV++ +  ERVG N
Sbjct: 287 ELFGHEKGSFTGAVGMRKGRFELADGGTIFLDEVGELSLPMQAKLLRVIQERTFERVGGN 346

Query: 275 HPREVDVRIIAATNRNLGALVRAGRFREDLLFRINVIPVTLPALAARREDIPLLAAFFLR 334
            P +VD+RIIAATNRNL  +V  G FREDL +R+NV P+T+P L  R  D+ LLA  F+ 
Sbjct: 347 KPVKVDLRIIAATNRNLLDMVAKGTFREDLYYRLNVFPITIPPLRDRGSDVVLLADHFVA 406

Query: 335 AITERDGRKAGGLTPAALRHLVAYTWPGNVRELRSAMEYACVVAGGGDIDAEHLPPHI 392
                 G+    ++  AL  L+AY WPGNVREL + +E + +++  G I   +LPP +
Sbjct: 407 RSAAAAGKDVKRISTPALNMLMAYHWPGNVRELENVIERSVILSDDGVIHGYNLPPSL 464



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 518 EGEERRQLLTALRRARGNISEAARLLGVYRGTVRNRMARYGID 560
           E  E   ++ AL+   GN +EAA+ LG+ R  +  R+ +YGID
Sbjct: 483 EAVEYEMIVEALKTHNGNTTEAAKELGLTRRVLGLRIEKYGID 525