Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  264 bits (675), Expect = 5e-75
 Identities = 153/315 (48%), Positives = 191/315 (60%), Gaps = 13/315 (4%)

Query: 115 VEIITDLSELVDKERRIEELSRLLGSEEGFA------GMVGASSAMHRTFRLLERAAESD 168
           +E   D + L  + R   EL   L S+ G        G++G S+ MH    ++   A S+
Sbjct: 115 LERALDHTRLASENR---ELRERLSSQGGAGAPGASHGIIGRSAPMHELVEMIATVAPSE 171

Query: 169 APVLLLGASGTGKELAARAVHELGRRRNGPYVQLNCAALNENLLESELFGHVRGAFTGAV 228
           A VL+ G SGTGKEL ARA+H    R   P V +NCAAL E LLESELFGH RGAFTGA 
Sbjct: 172 ATVLITGESGTGKELVARALHAASHRSAKPLVTVNCAALTETLLESELFGHERGAFTGAD 231

Query: 229 RDRQGRFEAAHGGDLFLDEIGDLPLPTQVKLLRVLETKRIERVGDNHPREVDVRIIAATN 288
           R R+GRF  A GG LFLDEIG++PL  Q KLLR L+   ++RVG + P  VDVR+IAATN
Sbjct: 232 RRREGRFVQADGGTLFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATN 291

Query: 289 RNLGALVRAGRFREDLLFRINVIPVTLPALAARREDIPLLAAFFLRAITERDGRKAGGLT 348
           R+L     AGRFREDL +R+NVI V +PAL  R  D+PLLAAFFL   TE++ +   G T
Sbjct: 292 RDLREEAAAGRFREDLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFT 351

Query: 349 PAALRHLVAYTWPGNVRELRSAMEYACVVAGGGDIDAEHLPPHIIDGTPECGGHALAATV 408
           P A+  L+ + WPGNVREL +A+E A ++A G  +    LP H   G     G   +A  
Sbjct: 352 PQAMDMLLRHDWPGNVRELENAIERAVILATGDYVTERELPLHFGGGGSGIAGSGGSA-- 409

Query: 409 AERTGPDAAQEAPAD 423
              TG   A  APAD
Sbjct: 410 --GTGEAGAGNAPAD 422



 Score = 46.6 bits (109), Expect = 2e-09
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 491 LPGTSGEAGTPP------PAMADAFPPTQRELREGEERRQLLTALRRARGNISEAARLLG 544
           + G+ G AGT        PA  D   P      E  ERR ++  LR    N SEAAR LG
Sbjct: 402 IAGSGGSAGTGEAGAGNAPADGDGLAPYAGLSLEDLERRAIIATLRETADNKSEAARRLG 461

Query: 545 VYRGTVRNRMARYGID 560
           + R T+ N++ +Y ++
Sbjct: 462 ITRATLHNKLKKYDLE 477