Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 521 a.a., PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  648 bits (1672), Expect = 0.0
 Identities = 353/567 (62%), Positives = 399/567 (70%), Gaps = 59/567 (10%)

Query: 7   RFLRGIIDTLNEGLVFVGPDGRIRMVNPALERLTGFTRDELVGRACSVLQCDACVRQRKD 66
           RFLR +I+T+N+G   VGPDGRI M NPALERLTG+   ELVG+ C+VL CDACVR R  
Sbjct: 8   RFLREVINTINDGFFLVGPDGRILMANPALERLTGYEAGELVGQTCAVLNCDACVRSRSL 67

Query: 67  GGAHWCRLFDRKGENRKRCTVRRKDGTVVPVLKNARVLTDGQGGVQGAVEIITDLSELVD 126
           GG HWCRLFDRK E+RKRCT+ R+DGT + VLKNA+VL +  G V  AVE ITD+S +V+
Sbjct: 68  GGGHWCRLFDRKDEHRKRCTLVRRDGTSITVLKNAKVLKE-DGRVIAAVETITDISAVVE 126

Query: 127 KERRIEELSRLLGSEEGFAGMVGASSAMHRTFRLLERAAESDAPVLLLGASGTGKELAAR 186
           K+RRIEELSRLLGS+EGFAGMVG S AM R F+++ERAAESDAPVL+LGASGTGKELAAR
Sbjct: 127 KDRRIEELSRLLGSDEGFAGMVGTSPAMQRVFKIIERAAESDAPVLVLGASGTGKELAAR 186

Query: 187 AVHELGRRRNGPYVQLNCAALNENLLESELFGHVRGAFTGAVRDRQGRFEAAHGGDLFLD 246
           A+HELGRR+NG YVQLNCAALNE LLESELFGHVRGAFTGA+RDRQGRFEAAHGGD+FLD
Sbjct: 187 AIHELGRRKNGAYVQLNCAALNEALLESELFGHVRGAFTGAIRDRQGRFEAAHGGDIFLD 246

Query: 247 EIGDLPLPTQVKLLRVLETKRIERVGDNHPREVDVRIIAATNRNLGALVRAGRFREDLLF 306
           EIGD+PLP QVKLLRVLETKRIERVGDN  REVDVRIIAATNR+LG LVRAGRFREDLLF
Sbjct: 247 EIGDIPLPIQVKLLRVLETKRIERVGDNASREVDVRIIAATNRDLGRLVRAGRFREDLLF 306

Query: 307 RINVIPVTLPALAARREDIPLLAAFFLRAITERDGRKAGGLTPAALRHLVAYTWPGNVRE 366
           RINVIP+ LP LA RREDIPLLAA FL+ I ERDGR   GLTP ALR L AY WPGNVRE
Sbjct: 307 RINVIPIHLPPLADRREDIPLLAAHFLKGIRERDGRDVTGLTPEALRLLTAYGWPGNVRE 366

Query: 367 LRSAMEYACVVAGGGDIDAEHLPPHIIDG--TPECGGHALAATVA-ERTGPDAAQEAPAD 423
           LRSA+EYACV+A GG +  EHLP HI      PEC G      VA   +  + A  A   
Sbjct: 367 LRSALEYACVIAEGGRLGVEHLPQHIAGAGWHPECAGPGGTGGVAGNASHSNHANHAGTG 426

Query: 424 EVRPDAPVRVAGPGAGGGTQG---RAGEVGAVAAIPVVSAVPVVPAVPVVTDSGPDHEMM 480
           +  PD      G G  G  +G   R G+ G + A                          
Sbjct: 427 DRHPDLHSAQGGHGPHGSGEGVVRRGGDAGGMPA-------------------------- 460

Query: 481 SVDAHDRVMSLPGTSGEAGTPPPAMADAFPPTQRELREGEERRQLLTALRRARGNISEAA 540
                                      AF    R  R   ER +L+ ALR A GN+SEAA
Sbjct: 461 --------------------------GAFAYGGRPARHERERAELVEALRAAGGNVSEAA 494

Query: 541 RLLGVYRGTVRNRMARYGIDLHREVKG 567
           RLLGV+RGTVRNRM R+GID+H+ V G
Sbjct: 495 RLLGVHRGTVRNRMLRFGIDVHKAVAG 521