Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 350 a.a., sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  255 bits (651), Expect = 2e-72
 Identities = 162/416 (38%), Positives = 224/416 (53%), Gaps = 72/416 (17%)

Query: 145 AGMVGASSAMHRTFRLLERAAESDAPVLLLGASGTGKELAARAVHELGRRRNGPYVQLNC 204
           +G++G S+++   FR+L + A +D+ VL+ G SGTGKEL  RA+H   +RR+ P+V +NC
Sbjct: 6   SGIIGQSTSLRDVFRILAKVAPTDSTVLVTGESGTGKELLVRALHSNSQRRSMPFVPINC 65

Query: 205 AALNENLLESELFGHVRGAFTGAVRDRQGRFEAAHGGDLFLDEIGDLPLPTQVKLLRVLE 264
            A+ + LLESELFGH +GAFT A+R R GRFE A GG +FLDEIG++ L  QVK+LRVL+
Sbjct: 66  GAIPKELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLTLQVKILRVLQ 125

Query: 265 TKRIERVGDNHPREVDVRIIAATNRNLGALVRAGRFREDLLFRINVIPVTLPALAARRED 324
            K IERVG    ++VDVRI+AATNR+L   V AGRFREDL +R+NVIP+ LPAL  R  D
Sbjct: 126 EKEIERVGGAGVKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPALRERGGD 185

Query: 325 IPLLAAFFLRAITERDGRKAGGLTPAALRHLVAYTWPGNVRELRSAMEYACVVAGGGDID 384
           I +LA  F+R   ER GR+   L P   + L AY+WPGNVREL + ME   ++A    + 
Sbjct: 186 ILVLAEHFMRRFCERKGRRCLALAPDTRKVLAAYSWPGNVRELENFMERLSILADDDVVP 245

Query: 385 AEHLPPHIIDGTPECGGHALAATVAERTGPDAAQEAPADEVRPDAPVRVAGPGAGGGTQG 444
              LP  I+D   +        ++ E T PD              P+ VA   A GG   
Sbjct: 246 PADLPRKILDEVGD------IVSLPEPTPPD--------------PLPVATGAASGG--- 282

Query: 445 RAGEVGAVAAIPVVSAVPVVPAVPVVTDSGPDHEMMSVDAHDRVMSLPGTSGEAGTPPPA 504
                           +P   + P +T           D  D+ M+L             
Sbjct: 283 ----------------MPAGFSWPTIT-----------DLRDKGMNL------------- 302

Query: 505 MADAFPPTQRELREGEERRQLLTALRRARGNISEAARLLGVYRGTVRNRMARYGID 560
                    ++  +  E R L  AL  A G  ++AA +LG+ R T+  ++ +   D
Sbjct: 303 ---------KDFLDTVEERLLDEALTMAEGVKNQAAEILGIKRTTLIEKLKKKRAD 349