Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 534 a.a., sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  295 bits (755), Expect = 3e-84
 Identities = 205/563 (36%), Positives = 277/563 (49%), Gaps = 61/563 (10%)

Query: 6   PRFLRGIIDTLNEGLVFVGPDGRIRMVNPALERLTGFTRDELVGRACS-VLQCDACVRQR 64
           P   R ++D +   L  V  + R+  +N A   LT  + +      C  V +C  C    
Sbjct: 24  PVAARTLLDRIPLPLALVSAERRVMFLNQAACALTAMSPERAQNLPCRYVFRCSLCT--- 80

Query: 65  KDGGAHWCRLFDRK-----GENRKRCTVRRKDGTVVPVLKNARVLTDGQGGVQGAVEIIT 119
              G     + D+          +   +   D   +PV      LT   G   G  E + 
Sbjct: 81  ---GGCPLDVVDKSPTAAVAPVAREADIVNADRARIPVRVTCGALTAPDGSRVGYFETLE 137

Query: 120 DLSELVDKERRIEELSRLLGSEEGFAGMVGASSAMHRTFRLLERAAESDAPVLLLGASGT 179
           DL      E R E         +GF  M+G S  M R FRLL   A++D+ VL+ G +GT
Sbjct: 138 DLRLFRPAEARPEW-------PQGFGDMLGHSPEMERVFRLLPGIAQTDSSVLVTGETGT 190

Query: 180 GKELAARAVHELGRRRNGPYVQLNCAALNENLLESELFGHVRGAFTGAVRDRQGRFEAAH 239
           GK+L A A+H    R  GP+V++NC AL E+LLESELFGH +GAFTGA  ++ GRF  AH
Sbjct: 191 GKDLLAEALHNASTRAKGPFVKVNCGALPESLLESELFGHQKGAFTGASENKPGRFRLAH 250

Query: 240 GGDLFLDEIGDLPLPTQVKLLRVLETKRIERVGDNHPREVDVRIIAATNRNLGALVRAGR 299
            G LFL E+GDLPLP QVKLL  L+ K I  +G      VDVRI+AAT+R+L  +VR GR
Sbjct: 251 NGTLFLTEVGDLPLPLQVKLLTFLDDKIIHPLGSTRGVHVDVRIMAATHRDLRRMVREGR 310

Query: 300 FREDLLFRINVIPVTLPALAARREDIPLLAAFFLRAITERDGRKAGGLTPAALRHLVAYT 359
           FREDLL+R+NV+   LP L  R +DI L  A +L+      G++  G++PAA R L+ + 
Sbjct: 311 FREDLLYRLNVVRFHLPPLRERGDDIALFLAHYLKVYAGMFGKRLTGVSPAAERVLLRHA 370

Query: 360 WPGNVRELRSAMEYACVVAGGGDIDAEHLPPHIID--GTPECGGHALAATVAERTGPDAA 417
           +PGNVRELR+ +EY   V     +D  HLP ++++  G P+       ATV +R G  A 
Sbjct: 371 YPGNVRELRNIVEYCVNVCQETHVDLPHLPRYLLEESGEPDAAEGGGVATVGQRVGTGA- 429

Query: 418 QEAPADEVRPDAPVRVAGPGAGGGTQGRAGEVGAVAAIPVVSAVPVVPAVPVVTDSGPDH 477
            +AP             G G  G   G AG     A +   S  P  P        GP  
Sbjct: 430 -QAP------------RGGGVAGADSGAAG-----AGLSGRSRHPGHP-----VQGGP-- 464

Query: 478 EMMSVDAHDRVMSLPGTSGEAGTPPPAMADAFPPTQRELREGEERRQLLTALRRARGNIS 537
                         PG+SG  G+P   +  A  P         ERR ++ AL +ARG   
Sbjct: 465 --------------PGSSGSLGSPDQGVPFAGVPQGDATWAEAERRLIMEALVQARGRRG 510

Query: 538 EAARLLGVYRGTVRNRMARYGID 560
           EAA  LG  R T+  +M +YG+D
Sbjct: 511 EAAMALGWARTTLWRKMRQYGLD 533