Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  269 bits (687), Expect = 2e-76
 Identities = 140/262 (53%), Positives = 179/262 (68%)

Query: 134 LSRLLGSEEGFAGMVGASSAMHRTFRLLERAAESDAPVLLLGASGTGKELAARAVHELGR 193
           L   L S    AG++G S +MHR   ++   A S+A VL+ G SGTGKEL ARA+H   +
Sbjct: 134 LKTTLASSFDPAGIIGQSQSMHRLMDMMASIAPSEATVLVTGESGTGKELIARAIHANSQ 193

Query: 194 RRNGPYVQLNCAALNENLLESELFGHVRGAFTGAVRDRQGRFEAAHGGDLFLDEIGDLPL 253
           RR+GPYV +NCAAL E LLESELFGH +GAFTGA + R+GRF++A  G +FLDEIG+  L
Sbjct: 194 RRHGPYVTVNCAALTETLLESELFGHEKGAFTGAEKRREGRFQSADKGTIFLDEIGETSL 253

Query: 254 PTQVKLLRVLETKRIERVGDNHPREVDVRIIAATNRNLGALVRAGRFREDLLFRINVIPV 313
           P Q KLLR ++ + I+RVG +    VDVRIIAATNR+L A V AGRFR+DL +R+NV+ +
Sbjct: 254 PMQAKLLRAIQEREIQRVGSDQTLRVDVRIIAATNRDLRAEVEAGRFRQDLYYRLNVVTL 313

Query: 314 TLPALAARREDIPLLAAFFLRAITERDGRKAGGLTPAALRHLVAYTWPGNVRELRSAMEY 373
            +P L  R EDIPLLA  FLR  TE++G++  G TP A+  L+ + WPGNVREL +A E 
Sbjct: 314 HVPPLRERVEDIPLLAGHFLRRFTEKNGKRVKGFTPQAMDRLLKHDWPGNVRELENAAER 373

Query: 374 ACVVAGGGDIDAEHLPPHIIDG 395
           A V+  G  I    LP  I  G
Sbjct: 374 AVVLLVGEYISERELPHAIAGG 395



 Score = 35.8 bits (81), Expect = 4e-06
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 521 ERRQLLTALRRARGNISEAARLLGVYRGTVRNRMARYGID 560
           ER  +L A+  + GN SEAAR LG+ R T+  ++ RY  D
Sbjct: 415 ERAAILDAMDASEGNKSEAARRLGITRKTLHAKLNRYADD 454