Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 528 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  259 bits (662), Expect = 2e-73
 Identities = 175/457 (38%), Positives = 239/457 (52%), Gaps = 54/457 (11%)

Query: 116 EIITDLSELVDKERRIEE---LSRLLGSEEGFAGMVGASSAMHRTFRLLERAAESDAPVL 172
           E+   L +  D  R +EE   L R L  ++  A +VGAS AM R    + +A  S+A +L
Sbjct: 108 ELTAVLEKAWDFGRLLEENENLRRRLSDDDPTAPIVGASQAMCRVRDFIRQAGPSEATIL 167

Query: 173 LLGASGTGKELAARAVHELGRRRNGPYVQLNCAALNENLLESELFGHVRGAFTGAVRDRQ 232
           ++G SGTGKEL A+ +H+   R + P V++NCAAL  +LLESELFG+++GAFTGAVRD+ 
Sbjct: 168 IMGESGTGKELIAQGLHDASNRADQPLVKVNCAALPGHLLESELFGYMKGAFTGAVRDKP 227

Query: 233 GRFEAAHGGDLFLDEIGDLPLPTQVKLLRVLETKRIERVGDNHPREVDVRIIAATNRNLG 292
           GRF+ A GG LFLDEIG+LPL  Q KLLR L+ + +E +G   P  VDVRIIAATNR+L 
Sbjct: 228 GRFQLARGGTLFLDEIGELPLELQSKLLRALQERVVEPLGAVRPVPVDVRIIAATNRDLK 287

Query: 293 ALVRAGRFREDLLFRINVIPVTLPALAARREDIPLLAAFFLRAITERDGRKAGGLTPAAL 352
             V AG FREDL FR+NV+ V  P L  R ED+P+LA   L  +  ++ +    ++P  L
Sbjct: 288 RAVEAGEFREDLFFRLNVLEVISPPLRDRLEDLPMLAGRLLERLCRKNKKGIRSVSPEFL 347

Query: 353 RHLVAYTWPGNVRELRSAMEYACVVAGGGDIDAEHLPPHIIDGTPECGGHALAATVAERT 412
             L+ Y+WPGNVREL + +E A +++    +  + LP  ++         A  A   ER 
Sbjct: 348 DALMRYSWPGNVRELENVLERALILSRSDTLGPDSLPSQVL---------ADRADRWERG 398

Query: 413 GPDAAQEAPADEV----------RPDAPVRVAGPGAGGGTQGRAGEVGAVAAIPVVSAVP 462
           GPD  Q    D V          RPD   R          QGR     A +AIP   A  
Sbjct: 399 GPDGGQYRGQDRVGDRQRPYSSDRPDMSDRAGMVDRAFERQGRPWGQDAASAIPRGDA-- 456

Query: 463 VVPAVPVVTDSGPDHEMMSVDAHDRVMSLPGTSGEAGTPPPAMADAFPPTQRELREGEER 522
                   + SG     M            G  G  G  P ++ DA            ER
Sbjct: 457 --------SWSGEGDGFMP----------GGYGGAPGAYPGSLDDA------------ER 486

Query: 523 RQLLTALRRARGNISEAARLLGVYRGTVRNRMARYGI 559
             LL AL    G+    A  LG+ R T++ ++ ++G+
Sbjct: 487 DALLRALEVHGGHRERTADALGISRRTLQYKLKKFGL 523