Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 488 a.a., sigma-54 dependent transcriptional regulator/sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  242 bits (617), Expect = 3e-68
 Identities = 143/407 (35%), Positives = 225/407 (55%), Gaps = 34/407 (8%)

Query: 12  IIDTLNEGLVFVGPDGRIRMVNPALERLTGFTRDELVGRACSVLQCDACVRQRKDGGAHW 71
           +++ + EG+     +G    +NPA ER+TG+  +EL+G+         C       G+H+
Sbjct: 22  LLNAVGEGIYGFDLNGNAVFINPAAERMTGWKNEELLGK-----NIHNCHHHSHADGSHY 76

Query: 72  ----CRLFDRKGENRKRCTVR----RKDGTVVPVLKNAR-VLTDGQGGVQGAVEIITDLS 122
               C +++   +   R        RKDG+  PV  ++  V  D +  + G V I  D+S
Sbjct: 77  PQEDCPIYNTLKDGIAREITHDVFWRKDGSSFPVYYSSTPVYRDNK--LIGVVAIFRDIS 134

Query: 123 ELVDKER-------RIEELSRLLGSEE-----------GFAGMVGASSAMHRTFRLLERA 164
                E+       +++ LS  L SE            G   + G S+ +    + L   
Sbjct: 135 IQKQTEQSLRHALAQVQALSEQLASENHYLQAELADKTGDVDISGGSAVIRHMIQQLHMV 194

Query: 165 AESDAPVLLLGASGTGKELAARAVHELGRRRNGPYVQLNCAALNENLLESELFGHVRGAF 224
           A +D+ VL+ G +GTGKEL AR +H+L RR++ P + +NCAA + +LLESELFGH +GAF
Sbjct: 195 ANTDSTVLICGENGTGKELVARNLHQLSRRKDKPMISVNCAAFSASLLESELFGHEKGAF 254

Query: 225 TGAVRDRQGRFEAAHGGDLFLDEIGDLPLPTQVKLLRVLETKRIERVGDNHPREVDVRII 284
           TGA   R+GRFE AH G LFLDE+ +L L  Q KLLRV++ +  ER+G +   +VD+R++
Sbjct: 255 TGATSQRKGRFELAHQGTLFLDEVAELSLEAQSKLLRVIQEQSFERLGGSETIKVDIRLV 314

Query: 285 AATNRNLGALVRAGRFREDLLFRINVIPVTLPALAARREDIPLLAAFFLRAITERDGRKA 344
           AA++ +L   V  G FR DL +R+NV P+ +P L AR  D+P L +  L  +  + G+K 
Sbjct: 315 AASHHDLLKRVEQGLFRMDLYYRLNVFPIQVPPLRARLGDMPELVSHILHTLNRKLGKKI 374

Query: 345 GGLTPAALRHLVAYTWPGNVRELRSAMEYACVVAGGGDIDAEHLPPH 391
            G++   L+ L+ Y+WPGNVREL++ +E   +++    +    +P H
Sbjct: 375 RGVSQKGLKKLMTYSWPGNVRELQNILEREAILSQTDILHIHAMPTH 421



 Score = 25.8 bits (55), Expect = 0.004
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 518 EGEERRQLLTALRRARGNISEAARLLGVYRGTVRNRMARYGI 559
           E +   Q L  L       + AA +LGV   T+R+RM + GI
Sbjct: 439 EAQHIEQTLKQLNWRISGANGAANVLGVPPSTLRSRMKKLGI 480