Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 460 a.a., response regulator GlrR from Herbaspirillum seropedicae SmR1

 Score =  243 bits (619), Expect = 2e-68
 Identities = 127/230 (55%), Positives = 159/230 (69%), Gaps = 3/230 (1%)

Query: 152 SAMHRTFRLLERA---AESDAPVLLLGASGTGKELAARAVHELGRRRNGPYVQLNCAALN 208
           S   R   LL  A   A SDA +L+ G SGTGKEL ARA+H    R   P++ +NC A+ 
Sbjct: 140 SRSQRVAELLAEARLVAASDASILIRGDSGTGKELLARAIHRASARAEQPFIAVNCGAIP 199

Query: 209 ENLLESELFGHVRGAFTGAVRDRQGRFEAAHGGDLFLDEIGDLPLPTQVKLLRVLETKRI 268
           E LLESELFGHV+GAFTGAV  R+G F+AAHGG LFLDEIGD+PLP QVKLLRVL+ K +
Sbjct: 200 EQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIGDMPLPLQVKLLRVLQEKTV 259

Query: 269 ERVGDNHPREVDVRIIAATNRNLGALVRAGRFREDLLFRINVIPVTLPALAARREDIPLL 328
            +VG N   EVDVRII+AT+R+L A +R G+FREDL +R+NV+ + LPAL  RREDI LL
Sbjct: 260 RQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNVVTLHLPALEERREDIALL 319

Query: 329 AAFFLRAITERDGRKAGGLTPAALRHLVAYTWPGNVRELRSAMEYACVVA 378
           A  FL+ I  +  ++  G  P AL  L    WPGNVR+L + +E  C ++
Sbjct: 320 ANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNVVEQVCALS 369



 Score = 28.1 bits (61), Expect = 8e-04
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 515 ELREGEERRQLLTALRRARGNISEAARLLGVYRGTVRNRMARYGIDLHR 563
           E ++  ER  L+  L+   GN+S+AARL    R      + + G+D  R
Sbjct: 395 EAKQKFERDYLIRLLKLTDGNVSDAARLADRNRTEFYRLLQKNGLDPRR 443