Pairwise Alignments

Query, 567 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 488 a.a., Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  247 bits (630), Expect = 9e-70
 Identities = 145/407 (35%), Positives = 229/407 (56%), Gaps = 34/407 (8%)

Query: 12  IIDTLNEGLVFVGPDGRIRMVNPALERLTGFTRDELVGRACSVLQCDACVRQRKDGGAHW 71
           +++ + EG+      G    +NPA ER+TG+  +EL+G+         C       G+H+
Sbjct: 22  LLNAVGEGIYGFDLKGNAVFINPAAERMTGWKNEELLGK-----NIHNCHHHSHADGSHY 76

Query: 72  ----CRLFDRKGENRKRCTVR----RKDGTVVPVLKNAR-VLTDGQGGVQGAVEIITDLS 122
               C +++   +   R        RKDG+  PV  ++  V  D +  + G V I  D+S
Sbjct: 77  PQEDCPIYNTLKDGIAREITHDVFWRKDGSSFPVYYSSTPVYRDNK--LIGVVAIFRDIS 134

Query: 123 ELVDKER-------RIEELSRLLGSEE-----------GFAGMVGASSAMHRTFRLLERA 164
                E+       +++ LS  L SE            G   + G+S+ +    + L   
Sbjct: 135 IQKQTEQSLRQALAQVQALSEQLASENHYLQAELADKTGDVDISGSSAVIRHMIQQLHMV 194

Query: 165 AESDAPVLLLGASGTGKELAARAVHELGRRRNGPYVQLNCAALNENLLESELFGHVRGAF 224
           A +D+ VL+ G +GTGKEL AR +H+L RR++ P + +NCAA + +LLESELFGH +GAF
Sbjct: 195 ANTDSTVLICGENGTGKELVARNLHQLSRRKDKPMISVNCAAFSASLLESELFGHEKGAF 254

Query: 225 TGAVRDRQGRFEAAHGGDLFLDEIGDLPLPTQVKLLRVLETKRIERVGDNHPREVDVRII 284
           TGA + R+GRFE AH G LFLDE+ +L L  Q KLLRV++ +  ER+G +   +VD+R++
Sbjct: 255 TGATQQRKGRFELAHQGTLFLDEVAELSLEAQSKLLRVIQEQSFERLGGSETIKVDIRLV 314

Query: 285 AATNRNLGALVRAGRFREDLLFRINVIPVTLPALAARREDIPLLAAFFLRAITERDGRKA 344
           AA++ +L   V  G FR DL +R+NV P+ +P L AR ED+P L +  L ++  + G+K 
Sbjct: 315 AASHHDLLKRVEQGLFRMDLYYRLNVFPIQVPPLRARLEDMPELVSHILHSLNRKLGKKL 374

Query: 345 GGLTPAALRHLVAYTWPGNVRELRSAMEYACVVAGGGDIDAEHLPPH 391
            G++   L+ L+AY+WPGNVREL++ +E   +++    +    +P H
Sbjct: 375 RGVSQKGLQKLMAYSWPGNVRELQNILEREAILSQTDILQIHAMPTH 421



 Score = 25.0 bits (53), Expect = 0.007
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 518 EGEERRQLLTALRRARGNISEAARLLGVYRGTVRNRMARYGI 559
           E +   Q L  L       + AA +LGV   T+R+RM + GI
Sbjct: 439 EAQHIEQTLKQLNWRISGPNGAANVLGVPPSTLRSRMKKLGI 480