Pairwise Alignments

Query, 375 a.a., carbamoyl-phosphate synthase, small subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 381 a.a., carbamoyl phosphate synthase small subunit (RefSeq) from Shewanella amazonensis SB2B

 Score =  314 bits (804), Expect = 3e-90
 Identities = 171/374 (45%), Positives = 228/374 (60%), Gaps = 8/374 (2%)

Query: 3   ALLALEDGFVLEGRSFTGPGETGGEAIFNTGMTGYQEVLTDPSYAGQMVCMTYPLVGNYG 62
           ALL LEDG +  G +    G   GE +FNT MTGYQE+LTDPSY+ Q+V +TYP +GN G
Sbjct: 5   ALLVLEDGTLFSGTAIGADGIAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNTG 64

Query: 63  VTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRI 122
              ED ES  VH    I+++   + S++RS  SL DYLK + V+GI  IDTR LTR LR 
Sbjct: 65  TNDEDTESSAVHACGLIIRDLPLIASSFRSTQSLSDYLKANNVVGIADIDTRKLTRILRE 124

Query: 123 HGAMRGVISTQETDPARLVERARALPSMEGQNLVTRVAPAAPYRWDGERPQAVTLEPGGC 182
            GA  G I   + D  + +  A+A P ++G +L   V  A  Y+W   R  +  LE G  
Sbjct: 125 KGAQAGCILVGDLDSDKALAAAKAFPGLKGMDLAKEVTTAERYQW---RSGSWRLEGGLP 181

Query: 183 AWVGKGP---RLVVYDFGIKWNILRLLAQQGFDMLVVPPSFKAADVAAVGAQAVFLSNGP 239
           +   +     ++V YD+G+K NILR+L  +G D+ VVP    A++V A+    VFLSNGP
Sbjct: 182 SDTPESELKFKVVAYDYGVKTNILRMLVDRGCDVTVVPAKTPASEVLAMNPDGVFLSNGP 241

Query: 240 GDPATLKDEIAEIAKLAQT-YPTAGICLGHQLLGHALGGRTMKLKFGHHGCNHPVKDLTT 298
           GDP      IA I ++  T  P  GICLGHQLLG A G +T+K+KFGHHG NHPV D+  
Sbjct: 242 GDPEPCDYAIAAIQEILTTDIPVFGICLGHQLLGLASGAKTLKMKFGHHGANHPVGDVEK 301

Query: 299 GRIEISSQNHGFCVDIDSL-TDVEITHVNLNDGTLEGFAHKTKPVIAVQHHPEASPGPND 357
           G + I+SQNHGF VD  +L  ++++TH +L DG+L+G     KP  + Q HPEASPGP+D
Sbjct: 302 GTVMITSQNHGFAVDEATLPANLKVTHKSLFDGSLQGIHRTDKPAFSFQGHPEASPGPHD 361

Query: 358 SRYFFARFRNMVRE 371
               F  F  ++ E
Sbjct: 362 CAPLFDHFIELIEE 375