Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1399 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Pseudomonas stutzeri RCH2

 Score = 1608 bits (4165), Expect = 0.0
 Identities = 808/1355 (59%), Positives = 1032/1355 (76%), Gaps = 21/1355 (1%)

Query: 15   NIANIRNLKAIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYE 74
            N   I    AI+I +ASPE IR WS+GEVKKPETINYRTFKPERDGLFCAKIFGPVKDYE
Sbjct: 10   NQGQIEEFDAIKIALASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYE 69

Query: 75   CNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLD 134
            C CGKYKR+KHRG++CEKCGVEV  +KVRRERM HIELA+PVAHIWFLK+LPS+IG LLD
Sbjct: 70   CLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSLPSRIGLLLD 129

Query: 135  MTMADLEKVLYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSL 194
            MT+ D+E+VLYF+SY+V+DPG T L K Q+++++QY + ++ +G+D     MGAEAVR L
Sbjct: 130  MTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDD-FDARMGAEAVREL 188

Query: 195  LEELNLEELRVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPE 254
            L +++LE    +LREE   T S+TK KKL+KRLK++EAF  S N PEWM++ V+PV+PP+
Sbjct: 189  LIQIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFYGSGNLPEWMILTVLPVLPPD 248

Query: 255  LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFD 314
            LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L APDII+RNEKRMLQEAVDAL D
Sbjct: 249  LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQEAVDALLD 308

Query: 315  NGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGL 374
            NGRRGRAITG+N RPLKSL+DMIKGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGL
Sbjct: 309  NGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGL 368

Query: 375  PKKMALELFKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPT 434
            PKKMALELFKPFI+ +LE RG+A+TIK+AKKMVERE   VWD+L EV+RE+P++LNRAPT
Sbjct: 369  PKKMALELFKPFIFGKLEMRGMATTIKAAKKMVERELPEVWDVLAEVIREHPVLLNRAPT 428

Query: 435  LHRLGIQSFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTN 494
            LHRLGIQ+FEP+L+EGKAIQLHPLVC+AYNADFDGDQMAVHVPL++EAQ+E R LMMSTN
Sbjct: 429  LHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN 488

Query: 495  NILSPANGSPVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARI 554
            NILSPANG P+IVPSQD+VLGLYYMT +    KGE   F    EV   + AG  +LHAR+
Sbjct: 489  NILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAGEASLHARV 548

Query: 555  NVRM------EDG------KVVRTTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVSTA 602
             VR+       DG      ++V TTVGR L+++++P  + + +VN  + KK I++L++  
Sbjct: 549  KVRINEVIKDRDGSITKNTRIVDTTVGRALLFQIVPDGMAYDVVNQPMKKKAISKLINLC 608

Query: 603  YRDAGTKATVILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQY 662
            YR  G K TVI  D+L   G+ Y+T +GV+I V D  IP  K  +I+ A  EV +IE QY
Sbjct: 609  YRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEEVKEIESQY 668

Query: 663  RDGIITRTEKYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMST 722
              G++T+ EKYNKV+D+W+KA  +VS  M+  +S + V D R G +    SFNS+YMM+ 
Sbjct: 669  ASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVID-RDGKEAEQDSFNSMYMMAD 727

Query: 723  SGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTA 782
            SGARG+  Q+RQLAGMRGLMAKP G IIETPIT++FREGL+VLQYF STHGARKGLADTA
Sbjct: 728  SGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTA 787

Query: 783  LKTANSGYLTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYP 842
            LKTANSGYLTRRLVDV QD++V+E DCGT  G+ +T   EGG++  PL +R LGRV+   
Sbjct: 788  LKTANSGYLTRRLVDVAQDLVVTEVDCGTEQGLFMTPHIEGGDVVEPLGERVLGRVIARD 847

Query: 843  VYDPETRDLLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGH 902
            V  P T D+L P  TLVDE     +    +  V++RS ++C++  GIC  CYGRDLARGH
Sbjct: 848  VLKPGTDDVLVPAGTLVDEQWVDFIELNSIDEVVVRSPISCETRYGICAKCYGRDLARGH 907

Query: 903  IVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVR 962
             VNIGE VG+IAAQSIGEPGTQLTMRTFHIGG ASR     +   ++ G + L  +K V 
Sbjct: 908  QVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVMVKNGGTIRLHNLKHVE 967

Query: 963  NRDGQYMVMGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPF 1022
              DG  + + +SG+LA+ DD GRERE+Y LP G+ + V EG+++  G ++A+WDP   P 
Sbjct: 968  RADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDAGAVVAKWDPHTHPI 1027

Query: 1023 VSEVDGVIRFSDIVEGKTFQEKMDEATRMTTQTIIEYRT-----TNFRPSISICDEHG-E 1076
            V+E+ GV+ F  + E  T + + DE T +T   +++ +       + RP+I + D +G E
Sbjct: 1028 VTEMKGVVTFVGMEENITIKRQTDELTGLTNIEVMDPKDRPASGKDIRPAIKMVDANGKE 1087

Query: 1077 VKMRGNNIPATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEV 1136
            + + G ++PA Y LP  A++ V +G ++  GD+IAR P+ETSKT+DI GGLPRVA+LFE 
Sbjct: 1088 LLLPGTDVPAQYFLPANALVGVADGAEINVGDVIARIPQETSKTRDITGGLPRVADLFEA 1147

Query: 1137 RKPKDMAVVSEIAGIVTYAGETKGKRKLVVTPEIG-EAKEYLVPKGKHITVTDGDFVEAG 1195
            R+PK+ ++++EI+G +++  ETKGKR+LV+TP  G +  E L+PK +H+ V +G+ V  G
Sbjct: 1148 RRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFEGEQVNKG 1207

Query: 1196 DLLTEGHPELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVL 1255
            +++++G    HDILR  G   LA+Y+ +EIQ+VYR QGV I+DKHIE I+RQML+KV + 
Sbjct: 1208 EVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQMLRKVEIT 1267

Query: 1256 DPGGTTFLVGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQE 1315
            + G ++F+ G+Q++  +   EN R   E +  A    ++LGIT+ASL+T SFISAASFQE
Sbjct: 1268 ESGDSSFIKGDQMELTQVLEENERLSEEDKFVAKYVRVLLGITKASLSTESFISAASFQE 1327

Query: 1316 TTKVLTEASLRGKMDYLRGLKENVIVGRLIPAGTG 1350
            TT+VLTEA++ GK DYLRGLKENV+VGRLIPAGTG
Sbjct: 1328 TTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTG 1362