Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

 Score = 1615 bits (4182), Expect = 0.0
 Identities = 796/1363 (58%), Positives = 1039/1363 (76%), Gaps = 20/1363 (1%)

Query: 24   AIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRM 83
            AI+I +ASP+ IR WS+GEVKKPETINYRTFKPERDGLFCA+IFGPVKDYEC CGKYKR+
Sbjct: 19   AIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78

Query: 84   KHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKV 143
            KHRG++CEKCGVEV  +KVRR+RMGHIELA+PVAHIWFLK+LPS+IG L+DM + D+E+V
Sbjct: 79   KHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLPSRIGLLMDMPLRDIERV 138

Query: 144  LYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEEL 203
            LYF+ Y+V +PG T+L + Q+++E++YL  ++ +G D  T  MGAEA++ LL  ++L   
Sbjct: 139  LYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWG-DEFTAKMGAEAIKDLLASMDLPAE 197

Query: 204  RVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDG 263
              Q+REE   T S+TK+KKLTKRLK+VEAF+ S NKPEWM++ V+PV+PP+LRPLVPLDG
Sbjct: 198  AEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILTVLPVLPPDLRPLVPLDG 257

Query: 264  GRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAIT 323
            GRFATSDLNDLYRRVINRNNRLKRL+EL APDII+RNEKRMLQE+VDAL DNGRRGRAIT
Sbjct: 258  GRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQESVDALLDNGRRGRAIT 317

Query: 324  GTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELF 383
            G+N RPLKSL+DMIKGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALELF
Sbjct: 318  GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377

Query: 384  KPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSF 443
            KPFIYS+LE RGLA+TIK+AKKMVEREE VVWDIL+EV+RE+P++LNRAPTLHRLGIQ+F
Sbjct: 378  KPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAF 437

Query: 444  EPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGS 503
            EP+L+EGKAIQLHPLVC+AYNADFDGDQMAVHVPL++EAQ+E R LMMSTNNILSPA+G 
Sbjct: 438  EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGD 497

Query: 504  PVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRM----- 558
            P+IVPSQD+VLGLYYMT ++   KGE M    P E   AY      LHAR+ VR+     
Sbjct: 498  PIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTKTAELHARVKVRITETIK 557

Query: 559  -EDG------KVVRTTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVSTAYRDAGTKAT 611
             E+G      K++ TTVGR ++W+++P  +P+S+VN  L KK I+ L++ AYR  G K T
Sbjct: 558  HENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQISNLLNEAYRKLGLKDT 617

Query: 612  VILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRTE 671
            VI  D++   G+ YA  +GV++ + D+ +P+ K   I  A+ EV +I+ Q++ G++T  E
Sbjct: 618  VIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEEVREIQEQFQSGLVTAGE 677

Query: 672  KYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQDQ 731
            +YNKV+D+W      V+  M+  +SS+ V + R G +E   SFNSIYMM+ SGARG+  Q
Sbjct: 678  RYNKVIDIWASTNDRVAKAMMENLSSEQVIN-RQGEQEKQESFNSIYMMADSGARGSAAQ 736

Query: 732  MRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGYL 791
            +RQLAGMRGLMA+P G IIETPIT++F+EGL+VLQYF STHGARKGLADTALKTANSGYL
Sbjct: 737  IRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYL 796

Query: 792  TRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETRDL 851
            TRRLVDV QDV+V+EHDCGT++G+ +T   EGG++K+ L + ALGRV+   +  P T ++
Sbjct: 797  TRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELALGRVVSEDILKPGTDEV 856

Query: 852  LFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETVG 911
            L P NTL+DE   KV+ +  V  + +RS +TC SD G C  CYGRDLARGH+VN GE VG
Sbjct: 857  LIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYGRDLARGHLVNQGEAVG 916

Query: 912  IIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYMVM 971
            +IAAQSIGEPGTQLTMRTFHIGG AS     +S +A++ G V L   K V N+DG+ ++ 
Sbjct: 917  VIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKLHNAKFVTNKDGKLVIT 976

Query: 972  GKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVIR 1031
             ++ +L I+D+ GR +EK+ LP GS L   +G+ +  G+ +A W+    P ++EV G ++
Sbjct: 977  SRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANWEAHTMPIITEVAGRVQ 1036

Query: 1032 FSDIVEGKTFQEKMDEATRMTTQTIIEYRT-----TNFRPSISICDEHG-EVKMRGNNIP 1085
            F D+++G T   + D+ T +++  + E         + RP+I + D +G +V + G ++P
Sbjct: 1037 FVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKLVDANGKDVLIPGTDMP 1096

Query: 1086 ATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAVV 1145
            A Y LP  AI+ + +G ++  GD +AR P+++   KDI GGLPRVA+LFE RKPK+ A++
Sbjct: 1097 AQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAIL 1156

Query: 1146 SEIAGIVTYAGETKGKRKLVVTPEIGEAKEYLVPKGKHITVTDGDFVEAGDLLTEGHPEL 1205
            +E +G V++  ETKGKR+L++T + G+  E ++PK + + V +G+ +E GD++ +G    
Sbjct: 1157 AEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEGERIERGDVIADGPESP 1216

Query: 1206 HDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFLVG 1265
            HDILR RG   +  Y+ +E+QEVYR QGV I+DKHIE IVRQML+K T+   G + FL G
Sbjct: 1217 HDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDSEFLPG 1276

Query: 1266 EQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASL 1325
            E V+  + ++ N + + EG+ PA  E  +LGIT+ASL T SFISAASFQETT+VLTEA++
Sbjct: 1277 ETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAV 1336

Query: 1326 RGKMDYLRGLKENVIVGRLIPAGTGYREYVNTDILVPEQRERP 1368
             GK D LRGLKENVIVGRLIPAGTG+  + +      ++++ P
Sbjct: 1337 SGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGP 1379