Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta' (RefSeq) from Shewanella amazonensis SB2B

 Score = 1618 bits (4189), Expect = 0.0
 Identities = 797/1353 (58%), Positives = 1043/1353 (77%), Gaps = 21/1353 (1%)

Query: 23   KAIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKR 82
            + I+I +ASP+ IR WS+GEVKKPETINYRTFKPER+GLFCA+IFGPVKDYEC CGKYKR
Sbjct: 18   EGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYKR 77

Query: 83   MKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEK 142
            +KHRG++CEKCGVEV  +KVRRERMGHIELA+PVAHIWFLK+LPS+IG +LDMT+ D+E+
Sbjct: 78   LKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRDIER 137

Query: 143  VLYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEE 202
            VLYF+SY+V++PG T+L + Q+++E+ YL  ++ YG D     MGAEAV  LL  ++LE+
Sbjct: 138  VLYFESYVVIEPGMTSLERGQMLTEENYLDALEEYG-DEFEAKMGAEAVLDLLRAIDLEK 196

Query: 203  LRVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLD 262
               Q+REE  +  S+T++KK+TKRLK++EAF  S NKPEWM+++V+PV+PP+LRPLVPLD
Sbjct: 197  EIEQMREELPSINSETRRKKVTKRLKLIEAFYTSGNKPEWMILKVLPVLPPDLRPLVPLD 256

Query: 263  GGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAI 322
            GGRFATSDLNDLYRRVINRNNRLKRL++L APDII+RNEKRMLQE+VDAL DNGRRGRAI
Sbjct: 257  GGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRGRAI 316

Query: 323  TGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALEL 382
            TG+N RPLKSL+DMIKGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALEL
Sbjct: 317  TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALEL 376

Query: 383  FKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQS 442
            FKPFIY +LE RGLA+TIK+AKKMVERE   VWD+L+EV+RE+P+MLNRAPTLHRLGIQ+
Sbjct: 377  FKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHPVMLNRAPTLHRLGIQA 436

Query: 443  FEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANG 502
            FEP+L+EGKAIQLHPLVC+AYNADFDGDQMAVHVPL++EAQ+E R LMMSTNNILSPANG
Sbjct: 437  FEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANG 496

Query: 503  SPVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRM---- 558
             P+IVPSQD+VLGLYY++ +R   +GE M+F +  E   AY  G   LHAR+ VR+    
Sbjct: 497  EPIIVPSQDVVLGLYYISRERVNGRGEAMAFESVAEAEKAYRVGAAELHARVKVRITETI 556

Query: 559  --EDG------KVVRTTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVSTAYRDAGTKA 610
              E+G      ++V TTVGR ++ ++LP  + F +VN  + KK I++L++T YR  G K 
Sbjct: 557  IGENGERTKQRRIVDTTVGRAILSQILPAGLSFDLVNQDMGKKQISKLLNTCYRQLGLKD 616

Query: 611  TVILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRT 670
            TVI  D+L   G++YAT +G ++ + D+ IP  K  L+  A+ EV +I+ Q++ G++T  
Sbjct: 617  TVIFADQLMYTGFQYATISGASVGINDMVIPEEKYSLVADAEAEVIEIQEQFQSGLVTAG 676

Query: 671  EKYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQD 730
            E+YNKV+D+W  A + VS  M+  +SS+ V + R G +E   SFNSIYMM+ SGARG+  
Sbjct: 677  ERYNKVIDIWASANEKVSKAMMENLSSETVIN-RHGEEEKQKSFNSIYMMADSGARGSAA 735

Query: 731  QMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGY 790
            Q+RQLAGMRGLMAKP G IIETPI ++FREGL+VLQYF STHGARKGLADTALKTANSGY
Sbjct: 736  QIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGY 795

Query: 791  LTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETRD 850
            LTRRLVDV QD+++ E DCG  +G+ +  + EGG++  PL +R LGRV+   V  P T +
Sbjct: 796  LTRRLVDVAQDLVIIEDDCGATEGLSMKPLIEGGDVVEPLRERVLGRVVAEDVMYPGTDE 855

Query: 851  LLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETV 910
            +L P NTL+DE     L +  V  V +RS +TC++D G+C  CYGRDLARGHI+N+GE +
Sbjct: 856  VLAPRNTLLDEAWCDKLEQHSVDEVQVRSVITCETDFGVCAKCYGRDLARGHIINMGEAI 915

Query: 911  GIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYMV 970
            G++AAQSIGEPGTQLTMRTFHIGG ASR    +S + ++ G + L   K V N DG+ ++
Sbjct: 916  GVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNAGTLKLHNAKYVTNSDGKLVI 975

Query: 971  MGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVI 1030
            + +S +LAI+D+ GRE+E+Y +P G+ L   EG E+  GQI+A WDP   P ++EV G I
Sbjct: 976  VSRSSELAIIDELGREKERYKVPYGTVLDTKEGAEVNAGQIIANWDPHTHPIITEVAGSI 1035

Query: 1031 RFSDIVEGKTFQEKMDEATRMTTQTIIE--YRTT---NFRPSISICDEHG-EVKMRGNNI 1084
            +F D+++G T   + DE T +++  +++   RT+     RP++ + D++G ++ + G ++
Sbjct: 1036 KFVDMIDGVTITRQTDELTGLSSIVVLDVGQRTSAGKEMRPAVRLVDDNGNDLTIPGTDV 1095

Query: 1085 PATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAV 1144
            PA Y LP  AI+ + +   +  GD +AR P+E+SKT+DI GGLPRVA+LFE R+PK+ A+
Sbjct: 1096 PAQYFLPGNAIVNLDDNAKISVGDALARIPQESSKTRDITGGLPRVADLFEARRPKEPAI 1155

Query: 1145 VSEIAGIVTYAGETKGKRKLVVTP-EIGEAKEYLVPKGKHITVTDGDFVEAGDLLTEGHP 1203
            ++EI+G +++  ETKGKR+LV+TP + G+A E ++PK +++ V +G+ VE G+++ +G  
Sbjct: 1156 LAEISGTISFGKETKGKRRLVITPNDGGDAYEEMIPKWRNLNVFEGEKVERGEVIADGPE 1215

Query: 1204 ELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFL 1263
              HDILR RG   +A Y+ +E+Q+VYR QGV I+DKHIEVI+RQML+K  +   G + FL
Sbjct: 1216 SAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCIITQAGDSEFL 1275

Query: 1264 VGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEA 1323
             GEQV+    ++ N      G+ PA  E  +LGIT+ASL T SFISAASFQETT+VLTEA
Sbjct: 1276 EGEQVEVARVKIANRDLEAAGKQPAKFERELLGITKASLATESFISAASFQETTRVLTEA 1335

Query: 1324 SLRGKMDYLRGLKENVIVGRLIPAGTGYREYVN 1356
            ++ GK D LRGLKENVIVGRLIPAGTG+  + N
Sbjct: 1336 AVGGKSDNLRGLKENVIVGRLIPAGTGFAYHKN 1368