Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1400 a.a., DNA-directed RNA polymerase subunit beta' from Rhodopseudomonas palustris CGA009

 Score = 1603 bits (4152), Expect = 0.0
 Identities = 819/1365 (60%), Positives = 1029/1365 (75%), Gaps = 28/1365 (2%)

Query: 25   IQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRMK 84
            I+I+IASPE I  WSYGE+KKPETINYRTFKPERDGLFCA+IFGP+KDYEC CGKYKRMK
Sbjct: 21   IRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMK 80

Query: 85   HRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKVL 144
            ++GI+CEKC VEV  S+VRRERMGHIELAAPVAHIWFLK+LPS+IG LLDMT+ DLE++L
Sbjct: 81   YKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPSRIGQLLDMTLKDLERIL 140

Query: 145  YFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEELR 204
            YF+ Y+VL+PG T+L + Q++SE++YL+  D YG+D+ T  +GAEA+R LL+ L LE++ 
Sbjct: 141  YFEYYVVLEPGLTDLKERQLLSEEEYLRAQDQYGQDSFTAMIGAEAIRELLKGLELEKID 200

Query: 205  VQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDGG 264
             QLR E   T S  K KKL KRLKIVEAF  S NKPEWM++ V+PVIPP+LRPLVPLDGG
Sbjct: 201  AQLRAEMAETDSDIKHKKLAKRLKIVEAFRYSGNKPEWMILTVVPVIPPDLRPLVPLDGG 260

Query: 265  RFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAITG 324
            RFATSDLNDLYRRVINRNNRLKRLMEL APDIIIRNEKRMLQEAVDALFDNGRRGR ITG
Sbjct: 261  RFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRMLQEAVDALFDNGRRGRVITG 320

Query: 325  TNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELFK 384
             N RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVIVVGP+LKLHQCGLPKKMALELFK
Sbjct: 321  ANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFK 380

Query: 385  PFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSFE 444
            PFIYS L+ +GL++T+K AKK+VE+E   VWDIL+EV+RE+P++LNRAPTLHRLGIQ+FE
Sbjct: 381  PFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFE 440

Query: 445  PLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGSP 504
            P+L+EGKAIQLHPLVCSA+NADFDGDQMAVHVPLS+EAQ+E RVLMMSTNNIL PANG P
Sbjct: 441  PVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPANGQP 500

Query: 505  VIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRM----ED 560
            +IVPSQDIVLGLYY+++ R    GE   F    E+  A  + V+ LH +I  R     E+
Sbjct: 501  IIVPSQDIVLGLYYLSIMREGLPGEGKVFADLAELEHALYSKVIHLHTKIKYRWHWVNEE 560

Query: 561  G----KVVRTTVGRILVWELLPHC--VPFSMVNTTLTKKNIARLVSTAYRDAGTKATVIL 614
            G    +++ TT GRIL+ ++LP    +PF ++N  +TK+ I+ ++   YR  G K TVI 
Sbjct: 561  GENTVRLLETTAGRILLGQVLPKSPKLPFDVINKLMTKREISGVIDQVYRHCGQKETVIF 620

Query: 615  CDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRTEKYN 674
            CDR+  +G+  A +AG++    D+ +P +K  ++++ +    D E+QY DG+IT  EKYN
Sbjct: 621  CDRIMALGFFNAFKAGISFGKDDMVVPGSKWKIVDSTRTLAKDFEQQYNDGLITHGEKYN 680

Query: 675  KVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQDQMRQ 734
            KVVD W+KAT++++ EM++EIS+      R     +    NSIYMM+ SGARG+  QMRQ
Sbjct: 681  KVVDAWSKATEEIAKEMMKEISA-----VRKAPDGSEQQVNSIYMMAHSGARGSPAQMRQ 735

Query: 735  LAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGYLTRR 794
            LAGMRGLMAKPSGEIIETPI S+F+EGLSVL+YF STHGARKGLADTALKTANSGYLTRR
Sbjct: 736  LAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLADTALKTANSGYLTRR 795

Query: 795  LVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETRDLLFP 854
            LVDV QD I+++ DCGT  GI++  I + G +   L  R LGR     V DP T +++  
Sbjct: 796  LVDVAQDCIITQADCGTSLGIKMRAIVDAGTVVASLGSRILGRTAGEDVRDPATNEIIVK 855

Query: 855  ENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETVGIIA 914
               L++E   + + +  V  V IRSALTC+   GIC  CYGRDLARG  VN GE VG+IA
Sbjct: 856  RGDLMEERDVEAIHQAGVQEVKIRSALTCELVNGICGKCYGRDLARGTPVNHGEAVGVIA 915

Query: 915  AQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYMVMGKS 974
            AQSIGEPGTQLTMRTFHIGG A    E+S  E+   G++++      RN +G  + M ++
Sbjct: 916  AQSIGEPGTQLTMRTFHIGGAAQIN-EQSVIESNFDGKIVIKNRAIARNGEGHNVAMVRN 974

Query: 975  GQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVIRFSD 1034
              +AIVD  G ER  + +  G+R+ V EG+ +++GQ +AEWDP+  P ++EV+G I F D
Sbjct: 975  MVIAIVDPDGTERATHRIQYGARVHVDEGDMVKRGQRIAEWDPYTRPILTEVEGEIGFED 1034

Query: 1035 IVEGKTFQEKMDEATRMTTQTIIEYRTT----NFRPSISICDEHGEVKMRGNNIPATYSL 1090
            ++E ++  E +DE+T +  + +I++R+T    + RP+I I  + G+V        A Y L
Sbjct: 1035 LIEDQSISETLDESTGIAKRIVIDWRSTRGGADLRPAIVIKGKDGKVLKLARGGDARYML 1094

Query: 1091 PVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAVVSEIAG 1150
             V AI+ V  G  ++ GDI+AR   E++KT+DI GGLPRVAELFE R+PKD A+++EIAG
Sbjct: 1095 SVDAILSVDVGAQVKPGDILARISTESAKTRDITGGLPRVAELFEARRPKDAAIIAEIAG 1154

Query: 1151 IVTYAGETKGKRKLVVTP--EIGEAKEYLVPKGKHITVTDGDFVEAGDLLTEGHPELHDI 1208
             + +  + K KR+L + P  +  EA+EYL+PKGKHI + DGD VE GD + EG+P  HDI
Sbjct: 1155 TIRFGRDYKNKRRLSIEPLDKNEEAREYLIPKGKHIHLQDGDVVEKGDFIVEGNPAPHDI 1214

Query: 1209 LRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFLVGEQV 1268
            L  +G + LA YL +EIQEVYR QGV I+DKHIEVIVRQML+K+ + D G T  + GEQV
Sbjct: 1215 LAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIEITDQGDTDMISGEQV 1274

Query: 1269 DKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASLRGK 1328
            DK EF   N +A+ EG+ PAT  P++LGIT+ASL T SF SAASFQETT+VLTEA++ GK
Sbjct: 1275 DKIEFNALNAKAVEEGKKPATGNPVLLGITKASLQTRSFFSAASFQETTRVLTEAAVNGK 1334

Query: 1329 MDYLRGLKENVIVGRLIPAGTG-----YREY-VNTDILVPEQRER 1367
            +D L GLKENVIVGRLIPAGTG      RE  V  D L+ ++RE+
Sbjct: 1335 VDPLEGLKENVIVGRLIPAGTGASMAKIREVAVKRDRLILDEREK 1379