Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1413 a.a., DNA-directed RNA polymerase subunit beta' from Phaeobacter inhibens DSM 17395

 Score = 1592 bits (4123), Expect = 0.0
 Identities = 805/1342 (59%), Positives = 1004/1342 (74%), Gaps = 22/1342 (1%)

Query: 25   IQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRMK 84
            I++++ASPE I  WSYGE+KKPETINYRTFKPERDGLFCA+IFGP+KDYEC CGKYKRMK
Sbjct: 22   IKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMK 81

Query: 85   HRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKVL 144
            +RG+VCEKCGVEV   KVRRERMGHIELA+PVAHIWFLK+LPS+IG +LDMT+ DLE+VL
Sbjct: 82   YRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRDLERVL 141

Query: 145  YFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEELR 204
            YF++Y+V++PG T+LT  Q+++E++Y+   D +G DA T  +GAEA+R +L  ++LE   
Sbjct: 142  YFENYVVIEPGLTDLTYGQMMTEEEYMDAQDQFGMDAFTANIGAEAIREMLAAIDLEAEA 201

Query: 205  VQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDGG 264
              LR E      + K KK+ KRLK+VE+FLES N+PEWMVM VIPVIPPELRPLVPLDGG
Sbjct: 202  EHLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWMVMTVIPVIPPELRPLVPLDGG 261

Query: 265  RFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAITG 324
            RFATSDLNDLYRRVINRNNRLKRL+EL APDII+RNEKRMLQE+VDALFDNGRRGR ITG
Sbjct: 262  RFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRMLQESVDALFDNGRRGRVITG 321

Query: 325  TNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELFK 384
             N RPLKSLSDM+KGKQGRFRQNLLGKRVD+SGRSVIV GP+LKLHQCGLPKKMALELFK
Sbjct: 322  ANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLHQCGLPKKMALELFK 381

Query: 385  PFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSFE 444
            PFIYS LE +GL+ST+K AKK+VE+E   VWDIL+EV+RE+P+MLNRAPTLHRLGIQ+FE
Sbjct: 382  PFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIREHPVMLNRAPTLHRLGIQAFE 441

Query: 445  PLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGSP 504
            P L+EGKAIQLHPLVCSA+NADFDGDQMAVHVPLS+EAQ+E RVLMMSTNN+LSPANG+P
Sbjct: 442  PTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPANGAP 501

Query: 505  VIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRM----ED 560
            +IVPSQD++LGLYY+T++R    GE   F    EV  A DAG V LH +I  R+    E+
Sbjct: 502  IIVPSQDMILGLYYVTLEREGMPGEGKIFGTIDEVQHALDAGEVHLHTKITARITQIDEE 561

Query: 561  GKVV----RTTVGRILVWELLPHCV--PFSMVNTTLTKKNIARLVSTAYRDAGTKATVIL 614
            G  V     TT GR+ +  LLP  V  PF +VN  L KK + +++ T YR  G K +VI 
Sbjct: 562  GNEVLKRFETTPGRVRLGALLPKNVKAPFELVNRLLRKKEVQQVIDTVYRYCGQKESVIF 621

Query: 615  CDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRTEKYN 674
            CD++  +G+  A +AG++    D+ IP TK  L++  +++V D E+QY DG+IT+ EKYN
Sbjct: 622  CDQIMTMGFREAFKAGISFGKDDMVIPDTKWTLVDETRDQVKDFEQQYMDGLITQGEKYN 681

Query: 675  KVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQDQMRQ 734
            KVVD W+K    V++ M+  IS+D     +     A    NS+YMM+ SGARG+  QM+Q
Sbjct: 682  KVVDAWSKCNDKVTDAMMGTISAD-----KRNEAGAVMEPNSVYMMAHSGARGSVTQMKQ 736

Query: 735  LAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGYLTRR 794
            L GMRGLMAKP+G+IIETPI S+F+EGL+VL+YF STHGARKGL+DTALKTANSGYLTRR
Sbjct: 737  LGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGLSDTALKTANSGYLTRR 796

Query: 795  LVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETRDLLFP 854
            LVDV QD IV + DCGT   I        GE+   L +R LGRV    +  P T +++  
Sbjct: 797  LVDVAQDCIVRDRDCGTEAAITAEAAVNDGEVVASLGERILGRVAAEDIKKPGTEEIIVA 856

Query: 855  ENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETVGIIA 914
               L+DE +A  + E  V S  IRS LTC+++ G+C  CYGRDLARG  VN GE VGIIA
Sbjct: 857  VGQLIDERMADAVEEAGVQSTRIRSPLTCEAEEGVCAQCYGRDLARGTQVNTGEAVGIIA 916

Query: 915  AQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYMVMGKS 974
            AQSIGEPGTQLTMRTFHIGG A    ++S  EA   G+++    + + N +G+ +V+G++
Sbjct: 917  AQSIGEPGTQLTMRTFHIGGVAQGG-QQSFLEASQEGKIVFEMPQTLENANGETLVVGRN 975

Query: 975  GQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVIRFSD 1034
             +L I D+ G ER  + L  GS+L V EG+ + +G  L EWDP+  P ++E  G  ++ D
Sbjct: 976  MKLIIQDEHGEERASHKLGYGSKLFVKEGQSVARGDKLFEWDPYTLPIIAEKPGTAKYVD 1035

Query: 1035 IVEGKTFQEKMDEATRMTTQTIIEYRT----TNFRPSISICDEHGEVKMRGNNIPATYSL 1090
            +V G   +++ DEAT MT + +I++R     ++ +P I + D  GE        P TY +
Sbjct: 1036 LVSGIAVRDETDEATGMTQKIVIDWRAAPKGSDLKPEIILVDGDGEPVRSDAGNPLTYPM 1095

Query: 1091 PVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAVVSEIAG 1150
             V AI+ V+ GQ + AGD++AR PRE +KTKDI GGLPRVAELFE R+PKD A+++EI G
Sbjct: 1096 SVDAILSVEEGQQIMAGDVVARIPREGAKTKDITGGLPRVAELFEARRPKDHAIIAEIDG 1155

Query: 1151 IVTYAGETKGKRKLVVTP--EIGEAKEYLVPKGKHITVTDGDFVEAGDLLTEGHPELHDI 1208
             V +  + K KR++ + P  E  E  EY+VPKGKHI V +GDFV+ GD + +G+P  HDI
Sbjct: 1156 YVRFGRDYKNKRRISIEPADESMEPVEYMVPKGKHIPVQEGDFVQKGDYIMDGNPAPHDI 1215

Query: 1209 LRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFLVGEQV 1268
            L   G + LA Y+ DE+Q+VYR QGV I+DKHIEVIVRQML+K  + D G TT L GE V
Sbjct: 1216 LSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWEISDSGDTTLLKGEHV 1275

Query: 1269 DKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASLRGK 1328
            DK EF   N +A+  G+ PA  EP++LGIT+ASL T SFISAASFQETT+VLTEAS++GK
Sbjct: 1276 DKQEFDTANEKALSRGKRPAQGEPILLGITKASLQTRSFISAASFQETTRVLTEASVQGK 1335

Query: 1329 MDYLRGLKENVIVGRLIPAGTG 1350
             D L GLKENVIVGRLIPAGTG
Sbjct: 1336 RDKLVGLKENVIVGRLIPAGTG 1357