Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1402 a.a., DNA-directed RNA polymerase, beta'' subunit, predominant form from Dechlorosoma suillum PS

 Score = 1606 bits (4158), Expect = 0.0
 Identities = 791/1347 (58%), Positives = 1036/1347 (76%), Gaps = 22/1347 (1%)

Query: 24   AIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRM 83
            AI I++ASP+ IR WSYGEVKKPETINYRTFKPERDGLFCAKIFGP+KDYEC CGKYKR+
Sbjct: 19   AITISLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRL 78

Query: 84   KHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKV 143
            KHRG++CEKCGVEV  +KVRRERMGHIELA+P AHIWFLK+LPS++G +LDMT+ D+E+V
Sbjct: 79   KHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSLPSRLGMVLDMTLRDIERV 138

Query: 144  LYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEEL 203
            LYF++Y+V++PG T+L + Q+++ED YL  ++ YG+D + + MGAEAVR LL  L+L+  
Sbjct: 139  LYFEAYVVIEPGMTSLNRGQLLTEDDYLAKVEEYGDDFIAL-MGAEAVRELLRTLDLDHE 197

Query: 204  RVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDG 263
              +LR E + T S+ K KK+ KRLKI+E F +S  KP+WM++EV+PV+PP+LRPLVPLDG
Sbjct: 198  VERLRSELETTGSEAKNKKIAKRLKILEGFQKSGIKPDWMILEVLPVLPPDLRPLVPLDG 257

Query: 264  GRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAIT 323
            GRFATSDLNDLYRRVINRNNRLKRL+EL AP+II+RNEKRMLQE+VD+L DNGRRG+A+T
Sbjct: 258  GRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQESVDSLLDNGRRGKAMT 317

Query: 324  GTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELF 383
            G N RPLKSL+DMIKGK GRFRQNLLGKRVDYSGRSVIVVGP+LKLHQCGLPK MALELF
Sbjct: 318  GANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELF 377

Query: 384  KPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSF 443
            KPFI+ +LE  GLA+TIK AKKMVE +E VVWDILE+V+RE+P+MLNRAPTLHRLGIQ+F
Sbjct: 378  KPFIFHKLELMGLATTIKQAKKMVESQEPVVWDILEDVIREHPVMLNRAPTLHRLGIQAF 437

Query: 444  EPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGS 503
            EP L+EGKAIQLHPLVC+A+NADFDGDQMAVHVPLS+EAQ+E R LM+++NN+LSPANG 
Sbjct: 438  EPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLSPANGE 497

Query: 504  PVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRMED--- 560
            P+IVPSQDIVLGLYY T DR   KGE M+F    EV+ A ++G+  LHA+++VR+++   
Sbjct: 498  PIIVPSQDIVLGLYYATRDRINAKGEGMNFADVSEVLRAVNSGLADLHAKVSVRLKEYVR 557

Query: 561  -------GKVVR--TTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVSTAYRDAGTKAT 611
                    K+ R  TT GR ++ E+LP  +PFS+++  L KK I++L++T++R  G K T
Sbjct: 558  GESGEWVEKITRYNTTCGRAILSEILPKGLPFSVIDKALKKKEISKLINTSFRRCGLKET 617

Query: 612  VILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRTE 671
            V+  D+L   GY  ATRAG++    D+ +P+ K  +I  A+ EV +IE QY +G++T  E
Sbjct: 618  VVFADKLMQNGYALATRAGISFCSDDMRVPTEKHTIIAEAEKEVKEIETQYTNGLVTFGE 677

Query: 672  KYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQDQ 731
            +YNKVVD+W +    V+  M+ ++  + V D R G      SFNSIYMM+ SGARG+  Q
Sbjct: 678  RYNKVVDIWGRTGDQVAKVMMEQLGHEEVVD-RHGKTVKQESFNSIYMMADSGARGSAAQ 736

Query: 732  MRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGYL 791
            +RQLAGMRGLMAKP G IIETPIT++FREGL+VLQYF STHGARKGLADTALKTANSGYL
Sbjct: 737  IRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796

Query: 792  TRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETRDL 851
            TRRLVDV QD++V+E DCGT +G+ +  + EGGE+  PL DR LGRV++  V +PE+ + 
Sbjct: 797  TRRLVDVTQDLVVTEDDCGTQNGVTMKALIEGGEVIEPLRDRILGRVVVADVVNPESEET 856

Query: 852  LFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETVG 911
            +    TLVDE++  ++ +  +  V +R+ LTC +  G+C  CYGRDL RG +VN+GE VG
Sbjct: 857  VIEAGTLVDEDLCDLIDKLGIDEVKVRTPLTCDTRYGLCAKCYGRDLGRGSLVNVGEAVG 916

Query: 912  IIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRV-ILSRVKAVRNRDGQYMV 970
            +IAAQSIGEPGTQLTMRTFH+GG ASR       + +  G V   + ++ V N  G+ +V
Sbjct: 917  VIAAQSIGEPGTQLTMRTFHVGGAASRAAVADRVDTKSNGVVRFTATMRYVTNVKGEKIV 976

Query: 971  MGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVI 1030
              +SG++ + DD GRERE++ +P G+ L   +G+ ++ G +LA WDP   P ++E  G I
Sbjct: 977  FTRSGEVLVTDDNGRERERHKVPYGAILTADDGQVVKAGAVLATWDPHTRPMITEYAGTI 1036

Query: 1031 RFSDIVEGKTFQEKMDEATRMTTQTIIE------YRTTNFRPSISICDEHG-EVKMRGNN 1083
            +F ++ EG T  +++D+ T ++T  +I+       +    RP + + DE+G EVKM G  
Sbjct: 1037 KFENVEEGSTVAKQIDDVTGLSTLVVIDPKRGGKAQAKGLRPQVKLLDENGQEVKMHGTE 1096

Query: 1084 IPATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMA 1143
               T +  VG+II V +GQ +  GD++A+ P+E++KT+DI GGLPRVAELFE R PKD+ 
Sbjct: 1097 HAVTITFQVGSIITVADGQQVGVGDVLAKIPQESAKTRDITGGLPRVAELFEARTPKDVG 1156

Query: 1144 VVSEIAGIVTYAGETKGKRKLVVTPEIGEAKEYLVPKGKHITVTDGDFVEAGDLLTEGHP 1203
            +++E  G V++  +TKGK++LV+T   G A EYL+ K KH+ V DG  V  G+++ +G P
Sbjct: 1157 MLAEYTGTVSFGKDTKGKQRLVITDLDGVAHEYLILKDKHVMVHDGQVVNKGEVIVDGEP 1216

Query: 1204 ELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFL 1263
            + H+IL+ +G + LARY+TDE+Q+VYR QGV I+DKHIEVIVRQML++VT+ +PG T F+
Sbjct: 1217 DPHEILKLKGVEALARYITDEVQDVYRLQGVKINDKHIEVIVRQMLRRVTITEPGDTRFI 1276

Query: 1264 VGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEA 1323
              EQV++ +   EN R + EG+ PA+ + ++LGIT+ASL+T SFISAASFQETT+VLTEA
Sbjct: 1277 KSEQVERADVLDENDRVVAEGKLPASYDYMLLGITKASLSTDSFISAASFQETTRVLTEA 1336

Query: 1324 SLRGKMDYLRGLKENVIVGRLIPAGTG 1350
            ++ GK D LRGLKENVIVGRLIPAGTG
Sbjct: 1337 AIMGKRDELRGLKENVIVGRLIPAGTG 1363