Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1385 a.a., DNA-directed RNA polymerase, beta' subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 2489 bits (6451), Expect = 0.0
 Identities = 1247/1385 (90%), Positives = 1318/1385 (95%)

Query: 1    MTLDDLFTVRGSAANIANIRNLKAIQITIASPENIREWSYGEVKKPETINYRTFKPERDG 60
            MTLDDLFTVRGS+AN+ANIRNLKAIQI+IA+PE+IREWSYGEVKKPETINYRTFKPERDG
Sbjct: 1    MTLDDLFTVRGSSANVANIRNLKAIQISIAAPESIREWSYGEVKKPETINYRTFKPERDG 60

Query: 61   LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW 120
            LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
Sbjct: 61   LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW 120

Query: 121  FLKTLPSKIGTLLDMTMADLEKVLYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGED 180
            FLKTLPSKIGTLLDMTMADLEKVLYFDSYIVLDPGSTNL KMQVISEDQYLQVIDHYGED
Sbjct: 121  FLKTLPSKIGTLLDMTMADLEKVLYFDSYIVLDPGSTNLAKMQVISEDQYLQVIDHYGED 180

Query: 181  ALTVGMGAEAVRSLLEELNLEELRVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKP 240
            AL VGMGAEAVRSLLEELNLEELR  LREESQATKSQTKKKKLTKRLKIVEAFLES NKP
Sbjct: 181  ALVVGMGAEAVRSLLEELNLEELRAMLREESQATKSQTKKKKLTKRLKIVEAFLESANKP 240

Query: 241  EWMVMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRN 300
            EWMVMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRN
Sbjct: 241  EWMVMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRN 300

Query: 301  EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV 360
            EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
Sbjct: 301  EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV 360

Query: 361  IVVGPKLKLHQCGLPKKMALELFKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEE 420
            IVVGPKLKLHQCGLPKKMALELFKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEE
Sbjct: 361  IVVGPKLKLHQCGLPKKMALELFKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEE 420

Query: 421  VVREYPIMLNRAPTLHRLGIQSFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV 480
            VVREYPI+LNRAPTLHRLGIQ+FEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV
Sbjct: 421  VVREYPILLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV 480

Query: 481  EAQIECRVLMMSTNNILSPANGSPVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVV 540
            EAQIECRVLMMSTNNILSPANGSPVIVPSQDIVLGLYYMTV+RSFEKGE M+FCAPWEVV
Sbjct: 481  EAQIECRVLMMSTNNILSPANGSPVIVPSQDIVLGLYYMTVERSFEKGEGMAFCAPWEVV 540

Query: 541  AAYDAGVVALHARINVRMEDGKVVRTTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVS 600
            AAYD+G V+LHAR+ VRMEDGK V TT GRILVWE+LP  V F  VN TLTKKNIARLV 
Sbjct: 541  AAYDSGSVSLHARVKVRMEDGKTVDTTPGRILVWEVLPKGVDFEFVNCTLTKKNIARLVG 600

Query: 601  TAYRDAGTKATVILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIER 660
             AYRDAGTKA VILCDRLKDVGYEYATRAG+TI VKDL IPS KK ++E +QNEVDDIER
Sbjct: 601  AAYRDAGTKAAVILCDRLKDVGYEYATRAGITIGVKDLRIPSKKKAMLEASQNEVDDIER 660

Query: 661  QYRDGIITRTEKYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMM 720
            QYRDGIITRTEKYNKVVDVWTKATQD+SNEM +EIS DI+ DP+TG +E NSSFN I+MM
Sbjct: 661  QYRDGIITRTEKYNKVVDVWTKATQDISNEMTKEISHDILVDPKTGKQEVNSSFNPIFMM 720

Query: 721  STSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLAD 780
            STSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGL VLQYF STHGARKGLAD
Sbjct: 721  STSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLDVLQYFNSTHGARKGLAD 780

Query: 781  TALKTANSGYLTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLL 840
            TALKTANSGYLTRRLVDVVQDVIVSE DCGTVDGIE+ H  +GG+IK+ LADR LGRVLL
Sbjct: 781  TALKTANSGYLTRRLVDVVQDVIVSELDCGTVDGIEIGHFVKGGDIKVRLADRVLGRVLL 840

Query: 841  YPVYDPETRDLLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLAR 900
            YPV+DPETR+LLFPENTL+DENVA+ L    +S+V IRSALTCQS+RG+C  CYGRDLAR
Sbjct: 841  YPVFDPETRELLFPENTLIDENVAQTLEATGISTVTIRSALTCQSERGVCARCYGRDLAR 900

Query: 901  GHIVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKA 960
            GH+VNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSS  +QHPGRVILSRVKA
Sbjct: 901  GHLVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSIVSQHPGRVILSRVKA 960

Query: 961  VRNRDGQYMVMGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNE 1020
            VRNRDGQ MV+GKSGQ+AIVDDQGREREKY LPNGSRL V +G EI+KG ILAEWDPFNE
Sbjct: 961  VRNRDGQMMVLGKSGQIAIVDDQGREREKYILPNGSRLNVADGSEIKKGVILAEWDPFNE 1020

Query: 1021 PFVSEVDGVIRFSDIVEGKTFQEKMDEATRMTTQTIIEYRTTNFRPSISICDEHGEVKMR 1080
            PFVSEV+G ++F+DI+EGKT+QEKMD+ATRMTTQ+IIEYRTTNFRPSISICDE+G+ K+R
Sbjct: 1021 PFVSEVEGTVKFTDIIEGKTYQEKMDDATRMTTQSIIEYRTTNFRPSISICDENGDPKIR 1080

Query: 1081 GNNIPATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPK 1140
              N+PATYSLPVGA+IMVK GQ++QAGDIIARKPRE+SKTKDIVGGLPRVAELFEVRKPK
Sbjct: 1081 SGNLPATYSLPVGALIMVKAGQEVQAGDIIARKPRESSKTKDIVGGLPRVAELFEVRKPK 1140

Query: 1141 DMAVVSEIAGIVTYAGETKGKRKLVVTPEIGEAKEYLVPKGKHITVTDGDFVEAGDLLTE 1200
            DMAVVSEI G VT+AGETKGKRKLVVTPE GEAKEYLVPKGKHITV+DGDFVEAG+LLTE
Sbjct: 1141 DMAVVSEIDGTVTFAGETKGKRKLVVTPETGEAKEYLVPKGKHITVSDGDFVEAGELLTE 1200

Query: 1201 GHPELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGT 1260
            GHPELHDILRT+GEK+LARYL DEIQEVYRFQGV IDDKHIEVIVRQML+K+TVLDPGGT
Sbjct: 1201 GHPELHDILRTKGEKFLARYLVDEIQEVYRFQGVGIDDKHIEVIVRQMLRKITVLDPGGT 1260

Query: 1261 TFLVGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVL 1320
            +FLVGEQVDKGEFR EN+RAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVL
Sbjct: 1261 SFLVGEQVDKGEFRHENSRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVL 1320

Query: 1321 TEASLRGKMDYLRGLKENVIVGRLIPAGTGYREYVNTDILVPEQRERPDKFLEDLEENPL 1380
            TEASLRGKMDYLRGLKENVIVGRLIPAGTGYREYV++DI VPEQ+ERPDKFLEDLE+NPL
Sbjct: 1321 TEASLRGKMDYLRGLKENVIVGRLIPAGTGYREYVHSDISVPEQKERPDKFLEDLEDNPL 1380

Query: 1381 LVDIY 1385
            LVDI+
Sbjct: 1381 LVDIF 1385