Pairwise Alignments

Query, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta' from Dyella japonica UNC79MFTsu3.2

 Score = 1627 bits (4213), Expect = 0.0
 Identities = 805/1346 (59%), Positives = 1039/1346 (77%), Gaps = 21/1346 (1%)

Query: 24   AIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRM 83
            +I+I +ASPE IR WSYGEVKKPETINYRTFKPERDGLFCA IFGPVKDYEC CGKYKRM
Sbjct: 19   SIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAAIFGPVKDYECLCGKYKRM 78

Query: 84   KHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKV 143
            KHRG+VCEKCG EV  +KVRRERMGHIELA+P AHIWFLK+LPS+IG +LDMT+ D+E++
Sbjct: 79   KHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSLPSRIGLMLDMTLRDIERI 138

Query: 144  LYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEEL 203
            LYF++++V+DPG T L + Q++SEDQYL+ ++ +G D     MGAEAV  LL+ L+L   
Sbjct: 139  LYFEAFVVIDPGLTALERGQLLSEDQYLEAVEEHG-DEFDARMGAEAVYELLKSLDLPGE 197

Query: 204  RVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDG 263
             V+L+EE  +T S+TK K+LTKR+K++EAFLES N+PEWMV+ V+PV+PP+LRPLVPLDG
Sbjct: 198  VVRLKEEISSTNSETKLKRLTKRVKLIEAFLESGNRPEWMVLTVLPVLPPDLRPLVPLDG 257

Query: 264  GRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAIT 323
            GRFATSDLNDLYRRVINRNNRLKRL+EL APDII+RNEKRMLQE+VDAL DNGRRGRAIT
Sbjct: 258  GRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQESVDALLDNGRRGRAIT 317

Query: 324  GTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELF 383
            GTN R LKSL+DMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP L+LHQCGLPKKMALELF
Sbjct: 318  GTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLRLHQCGLPKKMALELF 377

Query: 384  KPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSF 443
            KPFI+++L+ RG A+TIK+AKK+VEREE  VWDILE+V+RE+P++LNRAPTLHRLGIQ+F
Sbjct: 378  KPFIFAKLQARGEATTIKAAKKLVEREEGQVWDILEDVIREHPVLLNRAPTLHRLGIQAF 437

Query: 444  EPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGS 503
            EP+L+EGKAIQLHPLVC+A+NADFDGDQMAVHVPLS+EAQ+E R LMMS+NNILSPANG 
Sbjct: 438  EPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEARALMMSSNNILSPANGE 497

Query: 504  PVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRM----- 558
            P+IVP+QD+VLGLYYMT +    KG  M F +  EV  AYD   V LHA+I VRM     
Sbjct: 498  PIIVPTQDVVLGLYYMTRELVNVKGTGMVFSSITEVRRAYDNRAVELHAKIKVRMKVTQI 557

Query: 559  -EDG------KVVRTTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVSTAYRDAGTKAT 611
             E+G      ++  TTVGR L+ E+LP  +PF++ NT LTKK I+RL++++YR  G K T
Sbjct: 558  DEEGTRTSSVQLAETTVGRALLAEILPEGLPFALANTELTKKAISRLINSSYRLLGLKDT 617

Query: 612  VILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRTE 671
            V+  D+L   G+ +ATRAG++I + D+ IP  KK ++E A+ EV +I+ QY+ G++T  E
Sbjct: 618  VVFADKLMYTGFRFATRAGISIGIDDMIIPEQKKPILEEAEKEVVEIQEQYQSGLVTAGE 677

Query: 672  KYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQDQ 731
            +YNKVVD+W++  + V+  MI  I ++ V + + G   A  S NS+Y+M+ SGARG+  Q
Sbjct: 678  RYNKVVDIWSRTNELVAKAMIDGIGTEKVTNAK-GEIVAQKSMNSLYIMADSGARGSVAQ 736

Query: 732  MRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGYL 791
            +RQLAGMRGLMA+P G IIETPI ++FREGL+VLQYF STHGARKGLADTALKTANSGYL
Sbjct: 737  IRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGARKGLADTALKTANSGYL 796

Query: 792  TRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDP-ETRD 850
            TRRLVDV QDV+++  DCGT DG+ +  I EGG++  PL +R LGRV++  VY P E  +
Sbjct: 797  TRRLVDVAQDVVITSLDCGTEDGVIMQPIVEGGDVVEPLRERVLGRVVVEDVYGPGEDNE 856

Query: 851  LLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETV 910
             +   +TL+DE + + L +  V S+ +RS +TCQ+  G+C LCYGRDLARGH+VN+GE V
Sbjct: 857  PIVTRDTLLDEALVEKLDKAGVQSIKVRSPITCQASHGVCALCYGRDLARGHLVNMGEAV 916

Query: 911  GIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYMV 970
            G++AAQSIGEPGTQLTMRTFHIGG ASR     +   +  G +  + +K V++  G  + 
Sbjct: 917  GVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVKTTGTLKFNNLKTVQHAQGHLVA 976

Query: 971  MGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVI 1030
            + +SG+++++D  GRERE+Y +P G+ + V +G+ ++ GQ +A WDP   P VSEV G +
Sbjct: 977  VSRSGEVSVIDANGRERERYKVPYGATIAVKDGDPVKAGQTVANWDPHTHPIVSEVAGTV 1036

Query: 1031 RFSDIVEGKTFQEKMDEATRMTTQTIIEYR-----TTNFRPSISICDEHG-EVKMRGNNI 1084
            RF D ++G T Q + DE T + +  + + +       + RP + + D  G E+K+ G ++
Sbjct: 1037 RFIDFIDGVTVQSQTDELTGLESAVVTDPKRRGTAAKDLRPIVRLEDSKGRELKLPGTDV 1096

Query: 1085 PATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAV 1144
            PA Y LP GAI+ ++NG ++  GD++AR P+ETSKT+DI GGLPRVA+LFE RKPK+ A+
Sbjct: 1097 PAQYMLPAGAIVSIQNGAEVGVGDVVARIPQETSKTRDITGGLPRVADLFEARKPKEPAI 1156

Query: 1145 VSEIAGIVTYAGETKGKRKLVVTPEIGEAKEYLVPKGKHITVTDGDFVEAGDLLTEGHPE 1204
            ++E +G+V++  +TKGK++L++    G   E L+PK + + V +G+ VE G+ + +G P 
Sbjct: 1157 LAERSGVVSFGKDTKGKQRLIIKDSDGNEHEELIPKWRQVIVFEGEHVEKGETVVDGEPN 1216

Query: 1205 LHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFLV 1264
             HDILR  G + LA YL  EIQ+VYR QGV I+DKHIE I+RQML+KV + +PG + +L 
Sbjct: 1217 PHDILRLLGVEPLASYLVKEIQDVYRLQGVKINDKHIETIIRQMLRKVEITEPGDSHYLR 1276

Query: 1265 GEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEAS 1324
            GEQV++     EN RA      P   + ++LGIT+ASL T SFISAASFQETT+VLTEA+
Sbjct: 1277 GEQVERVRINAENDRATARNERPTDFQSVLLGITKASLATESFISAASFQETTRVLTEAA 1336

Query: 1325 LRGKMDYLRGLKENVIVGRLIPAGTG 1350
            +RG  D LRGLKENVIVGRLIPAGTG
Sbjct: 1337 VRGTRDTLRGLKENVIVGRLIPAGTG 1362